A package for building hierarchical block matrices from association matrices and for performing multi-scale analysis. It specifically targets chromatin contact maps, generated from high-throughput chromosome conformation capture data, such as 5C and Hi-C, and provides methods for detecting movements and for computing chain hierarchy and region communicability across scales.
Get started with
hbm's tutorials at: http://www.cl.cam.ac.uk/~ys388/hbm/
Maintainer: <[email protected]>
hbm's website: http://www.cl.cam.ac.uk/~ys388/hbm/
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