heritability: Marker-Based Estimation of Heritability Using Individual Plant or Plot Data

Implements marker-based estimation of heritability when observations on genetically identical replicates are available. These can be either observations on individual plants or plot-level data in a field trial. Heritability can then be estimated using a mixed model for the individual plant or plot data. For comparison, also mixed-model based estimation using genotypic means and estimation of repeatability with ANOVA are implemented. For illustration the package contains several datasets for the model species Arabidopsis thaliana.

AuthorWillem Kruijer, with a contribution from Ian White (the internal function pin). Contains data collected by Padraic Flood and Rik Kooke.
Date of publication2016-12-22 12:29:25
MaintainerWillem Kruijer <willem.kruijer@wur.nl>
LicenseGPL-3
Version1.2
https://sites.google.com/site/wkruijer/

View on CRAN

Files

heritability
heritability/NAMESPACE
heritability/data
heritability/data/K_hapmap.rda
heritability/data/BT_LW_H.rda
heritability/data/R_matrix_LDV.rda
heritability/data/LA_S.rda
heritability/data/LDV.rda
heritability/data/R_matrix_LD.rda
heritability/data/means_LD.rda
heritability/data/LD.rda
heritability/data/K_atwell.rda
heritability/data/datalist
heritability/data/K_swedish.rda
heritability/data/LA_H.rda
heritability/data/means_LDV.rda
heritability/R
heritability/R/repeatability.R heritability/R/GINV.R heritability/R/pin.R
heritability/R/marker_h2_means.r
heritability/R/AI_algorithm_weights.r
heritability/R/KinshipTransform.R heritability/R/marker_h2.R heritability/R/AI_algorithm.R
heritability/MD5
heritability/DESCRIPTION
heritability/man
heritability/man/BT_LW_H.Rd heritability/man/repeatability.Rd heritability/man/marker_h2_means.Rd heritability/man/K_arabidopsis.Rd heritability/man/means_floweringTime.Rd heritability/man/heritability-package.Rd heritability/man/leafArea.Rd heritability/man/R_matrix.Rd heritability/man/marker_h2.Rd heritability/man/floweringTime.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.