leafArea: _Arabidopsis_ leaf area data for the hapmap and Swedish...

In heritability: Marker-Based Estimation of Heritability Using Individual Plant or Plot Data

Arabidopsis leaf area data for the hapmap and Swedish regmap population.

Description

Arabidopsis leaf area data for the hapmap and Swedish regmap population.

Usage

data(LA_H); data(LA_S)

Format

Data frame with leaf area observations:

genotype

a factor, the levels being the accession identifiers

LA13_H

Leaf area 13 days after sowing, in numbers of pixels (hapmap)

LA13_S

Leaf area 13 days after sowing, in numbers of pixels (Swedish regmap)

replicate

The replicate (or block) each plant is contained in (factor with levels 1 to 4)

rep1

numeric encoding of the factor replicate: equals 1 if the plant is in replicate 1 and 0 otherwise

rep2

numeric encoding of the factor replicate: equals 1 if the plant is in replicate 2 and 0 otherwise

rep3

numeric encoding of the factor replicate: equals 1 if the plant is in replicate 3 and 0 otherwise

x

The within image x-coordinate of the plant. A factor with levels 1 2 3

y

The within image y-coordinate of the plant. A factor with levels 1 2 3 4

x1

numeric encoding of the factor x: equals 1 if the plant is in position 1 and 0 otherwise

x2

numeric encoding of the factor x: equals 1 if the plant is in position 2 and 0 otherwise

y1

numeric encoding of the factor y: equals 1 if the plant is in position 1 and 0 otherwise

y2

numeric encoding of the factor y: equals 1 if the plant is in position 2 and 0 otherwise

y3

numeric encoding of the factor y: equals 1 if the plant is in position 3 and 0 otherwise

Author(s)

Willem Kruijer <[e-mail]>; experiments conducted by Padraic Flood <[e-mail]>

References

• Kruijer, W. et al. (2015) Marker-based estimation of heritability in immortal populations. Genetics, Vol. 199(2), p. 1-20.

See Also

For the corresponding genetic relatedness matrices, see K_hapmap and K_swedish.

Examples

data(LA_H); data(LA_S)

heritability documentation built on Aug. 24, 2023, 9:08 a.m.