cnvall.mtx: Copy Number Variation

In hiddenf: The All-Configurations, Maximum-Interaction F-Test for Hidden Additivity

Description

Data from an experiment (courtesy of Dr. Matthew Breen, N.C. State University) to study copy number variation in dogs. Experiment included thousands of probes, several of which are included here, and indexed by the variable called ‘dataset’.

Usage

data(cnvall.mtx)

Value

cnvall.mtx

Matrix of copy number measurements for several probes. Measured for two types of tissue (columns) on each of six dogs (rows) with lymphoma. Copy Number measurements are one column in the matrix and it is not formatted for functions in 'hiddenf' that require matrix input.

Examples

data(cnvall.mtx)
cnvall.mtx
cnv3.mtx <- matrix(cnvall.mtx[25:36,3],byrow=TRUE,nrow=12,ncol=2)
cnv3.out <- HiddenF(cnv3.mtx)
print(cnv3.out$pvalue)
anova(cnv3.out)

hiddenf documentation built on May 2, 2019, 2:47 p.m.