convert.HDS.to.mcmc: function to convert HierarchicalDS MCMC list vector (used in...

In hierarchicalDS: Functions to Perform Hierarchical Analysis of Distance Sampling Data

Description

function to convert HierarchicalDS MCMC list vector (used in estimation) into an mcmc object (cf. coda package)

Usage

convert.HDS.to.mcmc(MCMC, N.hab.pois.par, N.hab.bern.par, n.ind.cov,
  n.cov.cols, Hab.pois.names, Hab.bern.names, Det.names, Cov.names,
  MisID.names, N.par.misID = NULL, misID.mat = NULL,
  fix.tau.nu = FALSE, misID = TRUE, spat.ind = TRUE,
  point.ind = TRUE)

Arguments

MCMC	list vector providing MCMC samples for each parameter type
N.hab.pois.par	see help for mcmc_ds.R
N.hab.bern.par	see help for mcmc_ds.R
n.ind.cov	see help for mcmc_ds.R
n.cov.cols	number of columns in Cov.prior.parms matrix
Hab.pois.names	see help for mcmc_ds.R
Hab.bern.names	see help for mcmc_ds.R
Det.names	see help for mcmc_ds.R
Cov.names	see help for mcmc_ds.R
MisID.names	see help for mcmc_ds.R
N.par.misID	see help for mcmc_ds.R
misID.mat	see help for mcmc_ds.R
fix.tau.nu	see help for mcmc_ds.R
misID	see help for mcmc_ds.R
spat.ind	see help for mcmc_ds.R
point.ind	see help for mcmc_ds.R

Author(s)

Paul B. Conn

hierarchicalDS documentation built on July 3, 2019, 1:07 a.m.