Description Usage Arguments Value Author(s)
generate initial values for misID model if not already specified by user
1 2 3 | generate_inits_misID(DM.hab.pois, DM.hab.bern, DM.det, N.hab.pois.par,
N.hab.bern.par, G.transect, Area.trans, Area.hab, Mapping, point.ind,
spat.ind, grp.mean, misID, misID.mat, N.par.misID)
|
DM.hab.pois |
a list of design matrices for the Poisson habitat model (elements are named sp1,sp2, etc.) |
DM.hab.bern |
If a hurdle model, a list of design matrices for the Bernoulli habitat model (elements are named sp1,sp2, etc.) (NULL if not hurdle) |
DM.det |
design matrix for detection model |
N.hab.pois.par |
vector giving number of parameters in the Poisson habitat model for each species |
N.hab.bern.par |
vector giving number of parameters in the Bernoulli habitat model for each species (NULL if not hurdle) |
G.transect |
a matrix of the number of groups of animals in area covered by each transect; each row gives a separate species |
Area.trans |
a vector giving the proportion of a strata covered by each transect |
Area.hab |
a vector of the relative areas of each strata |
Mapping |
a vector mapping each transect to it's associated strata |
point.ind |
is point independence assumed (TRUE/FALSE) |
spat.ind |
is spatial independence assumed? (TRUE/FALSE) |
grp.mean |
a vector giving the pois1 parameter for group size (one entry for each species) |
misID |
if TRUE, indicates that misidentification is incorporated into modeling |
misID.mat |
a matrix specifying which elements of the misID matrix are linked to model equations |
N.par.misID |
a vector giving the number of parameters for each misID model (in multinomial logit space) |
a list of initial parameter values
Paul B. Conn
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