gut_counts: Simulated gut microbiome MAG count table
In hilldiv3: Integral Analysis of Diversity Based on Hill Numbers
gut_counts R Documentation
Simulated gut microbiome MAG count table
Description
A small, simulated example data set representing metagenome-assembled
genome (MAG) abundances across host samples from two groups (control and
treatment), where a block of MAGs is enriched in the treatment group so
that beta diversity is non-trivial. Generated by data-raw/make-data.R.
Usage
gut_counts
Format
An integer matrix with 24 rows (MAGs, mag01..mag24) and 12
columns (samples, ctrl01..ctrl06 and trt01..trt06).
See Also
gut_tree, gut_traits
Examples
hilldiv(gut_counts, q = c(0, 1, 2))
hilldiv3 documentation built on Oct. 6, 2026, 5:06 p.m.
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| gut_counts | R Documentation |
Simulated gut microbiome MAG count table
Description
A small, simulated example data set representing metagenome-assembled
genome (MAG) abundances across host samples from two groups (control and
treatment), where a block of MAGs is enriched in the treatment group so
that beta diversity is non-trivial. Generated by data-raw/make-data.R.
Usage
gut_counts
Format
An integer matrix with 24 rows (MAGs, mag01..mag24) and 12
columns (samples, ctrl01..ctrl06 and trt01..trt06).
See Also
gut_tree, gut_traits
Examples
hilldiv(gut_counts, q = c(0, 1, 2))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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