gut_traits: Functional traits for the simulated gut MAGs
In hilldiv3: Integral Analysis of Diversity Based on Hill Numbers
gut_traits R Documentation
Functional traits for the simulated gut MAGs
Description
A trait table for the 24 MAGs in gut_counts, mixing continuous, categorical
and binary traits. Convert it to a functional distance with traits2dist()
for the functional-diversity paths.
Usage
gut_traits
Format
A data frame with 24 rows (MAGs) and 4 columns:
- genome_size
Approximate genome size in Mbp (numeric).
- gc_content
GC content as a proportion (numeric).
- oxygen
Oxygen tolerance: aerobe, anaerobe or facultative (factor).
- motility
Motility indicator, 0/1 (integer).
See Also
gut_counts, gut_tree, traits2dist()
Examples
d <- traits2dist(gut_traits)
hilldiv(gut_counts, q = c(0, 1), dist = d)
hilldiv3 documentation built on Oct. 6, 2026, 5:06 p.m.
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| gut_traits | R Documentation |
Functional traits for the simulated gut MAGs
Description
A trait table for the 24 MAGs in gut_counts, mixing continuous, categorical
and binary traits. Convert it to a functional distance with traits2dist()
for the functional-diversity paths.
Usage
gut_traits
Format
A data frame with 24 rows (MAGs) and 4 columns:
- genome_size
Approximate genome size in Mbp (numeric).
- gc_content
GC content as a proportion (numeric).
- oxygen
Oxygen tolerance: aerobe, anaerobe or facultative (factor).
- motility
Motility indicator, 0/1 (integer).
See Also
gut_counts, gut_tree, traits2dist()
Examples
d <- traits2dist(gut_traits)
hilldiv(gut_counts, q = c(0, 1), dist = d)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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