gut_tree: Phylogeny for the simulated gut MAGs
In hilldiv3: Integral Analysis of Diversity Based on Hill Numbers
gut_tree R Documentation
Phylogeny for the simulated gut MAGs
Description
An ultrametric coalescent tree over the 24 MAGs in gut_counts, scaled to
unit depth. Use it for the phylogenetic-diversity paths.
Usage
gut_tree
Format
A phylo object (see the ape package) with 24 tips whose
labels match the rows of gut_counts.
See Also
gut_counts, gut_traits
Examples
hilldiv(gut_counts, q = c(0, 1), tree = gut_tree)
hilldiv3 documentation built on Oct. 6, 2026, 5:06 p.m.
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| gut_tree | R Documentation |
Phylogeny for the simulated gut MAGs
Description
An ultrametric coalescent tree over the 24 MAGs in gut_counts, scaled to unit depth. Use it for the phylogenetic-diversity paths.
Usage
gut_tree
Format
A phylo object (see the ape package) with 24 tips whose
labels match the rows of gut_counts.
See Also
gut_counts, gut_traits
Examples
hilldiv(gut_counts, q = c(0, 1), tree = gut_tree)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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