iBATCGH: Integrative Bayesian Analysis of Transcriptomic and CGH Data

Bayesian integrative models of gene expression and comparative genomic hybridization data. The package provides inference on copy number variations and their association with gene expression.

Install the latest version of this package by entering the following in R:
install.packages("iBATCGH")
AuthorAlberto Cassese
Date of publication2015-07-06 19:31:05
MaintainerAlberto Cassese <alberto.cassese@maastrichtuniversity.nl>
LicenseGPL-2
Version1.3
http://www.r-project.org

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Files

inst
inst/include
inst/include/pRMHXImixture.h
inst/include/pRMHProbit.h
inst/include/MHRmixture.h
inst/include/pRMHXIProbit.h
inst/include/MixtureMain.h
inst/include/pRMHmixture.h
inst/include/prMixture.h
inst/include/MHXIProbit.h
inst/include/iBATCGH.h
inst/include/MHRProbit.h
inst/include/iBATCGH_RcppExports.h
inst/include/ProbitMain.h
inst/include/MHXImixture.h
src
src/Tran.cpp
src/Makevars
src/dir.cpp
src/prMHRProbit.cpp
src/MHXImixture.cpp
src/MixtureMain.cpp
src/MHXIProbit.cpp
src/prgmmixture.cpp
src/prProbit.cpp
src/prMHXImixture.cpp
src/truncgamma.cpp
src/prMHXIProbit.cpp
src/prXImixture.cpp
src/prRmixture.cpp
src/initial.cpp
src/prMHRmixture.cpp
src/omegagamma.cpp
src/Center.cpp
src/MHRProbit.cpp
src/MHRmixture.cpp
src/truncnorm.cpp
src/Makevars.win
src/RcppExports.cpp
src/RListToVector.cpp
src/ldnwpi.cpp
src/ProbitMain.cpp
src/mml.cpp
src/sm.cpp
NAMESPACE
data
data/NCI_60.rda
data/TCGA_lung.rda
data/datalist
R
R/InitMu.R R/Inference.R R/InitXi.R R/InferenceA.R R/RcppExports.R R/InferenceMu.R R/InferenceXi.R R/InferenceSd.R R/Scenario1.R R/Scenario2.R R/InferenceR.R
MD5
DESCRIPTION
man
man/InitXi.Rd man/Inference.Rd man/InferenceSd.Rd man/iBATCGH-package.Rd man/RListToVector.Rd man/Tran.Rd man/InferenceR.Rd man/InitMu.Rd man/InferenceA.Rd man/Scenario1.Rd man/TCGA_lung.Rd man/Scenario2.Rd man/iBATProbit.Rd man/InferenceMu.Rd man/InferenceXi.Rd man/NCI_60.Rd man/iBAT.Rd man/Center.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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