iBATCGH: Integrative Bayesian Analysis of Transcriptomic and CGH Data
Version 1.3

Bayesian integrative models of gene expression and comparative genomic hybridization data. The package provides inference on copy number variations and their association with gene expression.

AuthorAlberto Cassese
Date of publication2015-07-06 19:31:05
MaintainerAlberto Cassese <alberto.cassese@maastrichtuniversity.nl>
LicenseGPL-2
Version1.3
URL http://www.r-project.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("iBATCGH")

Getting started

Package overview

Popular man pages

Center: Preprocessing - Center gene expression data
Inference: Postprocessing - Posterior Inference
InferenceA: Postprocessing - Inference on the transition matrix
InferenceMu: Postprocessing - Inference on the vector of state specific...
InferenceSd: Postprocessing - Inference on the vector of state specific sd
InitMu: Preprocessing - Initialize state specific mean vector
Tran: Preprocessing - Tran
See all...

All man pages Function index File listing

Man pages

Center: Preprocessing - Center gene expression data
iBAT: Main - Mixture selection prior
iBATCGH-package: Integrative Bayesian Analysis of Transcriptomic and CGH data
iBATProbit: Main - Probit selection prior
Inference: Postprocessing - Posterior Inference
InferenceA: Postprocessing - Inference on the transition matrix
InferenceMu: Postprocessing - Inference on the vector of state specific...
InferenceR: Postprocessing - Inference on the association matrix
InferenceSd: Postprocessing - Inference on the vector of state specific sd
InferenceXi: Postprocessing - Inference on the latent states
InitMu: Preprocessing - Initialize state specific mean vector
InitXi: Preprocessing - Initialize matrix of latent states
NCI_60: NCI-60 cancer cell lines data
RListToVector: Internal function
Scenario1: Simulated data - Scenario 1
Scenario2: Simulated data - Scenario 2
TCGA_lung: TCGA lung squamous cell carcinoma data
Tran: Preprocessing - Tran

Functions

Files

inst
inst/include
inst/include/pRMHXImixture.h
inst/include/pRMHProbit.h
inst/include/MHRmixture.h
inst/include/pRMHXIProbit.h
inst/include/MixtureMain.h
inst/include/pRMHmixture.h
inst/include/prMixture.h
inst/include/MHXIProbit.h
inst/include/iBATCGH.h
inst/include/MHRProbit.h
inst/include/iBATCGH_RcppExports.h
inst/include/ProbitMain.h
inst/include/MHXImixture.h
src
src/Tran.cpp
src/Makevars
src/dir.cpp
src/prMHRProbit.cpp
src/MHXImixture.cpp
src/MixtureMain.cpp
src/MHXIProbit.cpp
src/prgmmixture.cpp
src/prProbit.cpp
src/prMHXImixture.cpp
src/truncgamma.cpp
src/prMHXIProbit.cpp
src/prXImixture.cpp
src/prRmixture.cpp
src/initial.cpp
src/prMHRmixture.cpp
src/omegagamma.cpp
src/Center.cpp
src/MHRProbit.cpp
src/MHRmixture.cpp
src/truncnorm.cpp
src/Makevars.win
src/RcppExports.cpp
src/RListToVector.cpp
src/ldnwpi.cpp
src/ProbitMain.cpp
src/mml.cpp
src/sm.cpp
NAMESPACE
data
data/NCI_60.rda
data/TCGA_lung.rda
data/datalist
R
R/InitMu.R
R/Inference.R
R/InitXi.R
R/InferenceA.R
R/RcppExports.R
R/InferenceMu.R
R/InferenceXi.R
R/InferenceSd.R
R/Scenario1.R
R/Scenario2.R
R/InferenceR.R
MD5
DESCRIPTION
man
man/InitXi.Rd
man/Inference.Rd
man/InferenceSd.Rd
man/iBATCGH-package.Rd
man/RListToVector.Rd
man/Tran.Rd
man/InferenceR.Rd
man/InitMu.Rd
man/InferenceA.Rd
man/Scenario1.Rd
man/TCGA_lung.Rd
man/Scenario2.Rd
man/iBATProbit.Rd
man/InferenceMu.Rd
man/InferenceXi.Rd
man/NCI_60.Rd
man/iBAT.Rd
man/Center.Rd
iBATCGH documentation built on May 20, 2017, 5:59 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.