This function computes the transition matrix corresponding to a specific matrix of latent states.
Matrix of estimated latent states
The matrix of latent states must consider only 4 states:
A 4 by 4 matrix with transition probabilities derived from the input matrix of latent states.
Guha S, Li Y, Neuberg D. Bayesian hidden Markov modelling of array cgh data. JASA. 2008;103(482):485-497.
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