Description Usage Arguments Details Value Author(s) References See Also Examples

This function takes a matrix of CGH data as the only argument and returns a crude estimate of the corresponding latent copy number states.

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`X` |
Matrix of aCGH data |

`bounds` |
Vector of threshold used to estimate the latent states |

Given as argument a vector of threshold bounds the function simply applies the thresholding to the data and groups them into four subsets. Each subset is associated to a specific latent state.

Return a matrix of estimated latent states, that could be used as input of the main function.

Alberto Cassese

Cassese A, Guindani M, Tadesse M, Falciani F, Vannucci M. A hierarchical Bayesian model for inference of copy number variants and their association to gene expression. Annals of Applied Statistics, 8(1), 148-175.

Cassese A, Guindani M, Vannucci M. A Bayesian integrative model for genetical genomics with spatially informed variable selection. Cancer Informatics.

See Also `Tran`

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iBATCGH documentation built on May 20, 2017, 5:59 a.m.

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