Files in iSubGen

Integrative Subtype Generation

MD5

README.md

NAMESPACE

DESCRIPTION

R/load.molecular.aberration.data.R R/create.autoencoder.irf.matrix.R R/calculate.scaling.R R/create.autoencoder.R R/cluster.patients.R R/combine.integrative.features.R R/read.scaling.factors.R R/apply.scaling.R R/write.scaling.factors.R R/calculate.integrative.similarity.matrix.R R/calculate.cis.matrix.R

inst/doc/iSubGenGuide.Rnw

inst/doc/iSubGenGuide.pdf

inst/exdata/cna_gene_rescale.txt

inst/exdata/methy_gene_rescale.txt

inst/exdata/snv_gene_rescale.txt

inst/exdata/methy_gene_recenter.txt

inst/exdata/snv_gene_recenter.txt

inst/exdata/snv_profiles.txt

inst/exdata/non_coding_snv_profiles.txt

inst/exdata/cna_profiles.txt

inst/exdata/methy_profiles.txt

inst/exdata/cna_gene_recenter.txt

inst/exdata/grs_profiles.txt

build/vignette.rds

vignettes/iSubGenGuide.Rnw

vignettes/Figures/iSubGen_figure_methodology_correlations.png

vignettes/Figures/iSubGen_figure_methodology_autoencoders.png

vignettes/Figures/iSubGen_figure_methodology_overview.png

man/create.autoencoder.Rd man/load.molecular.aberration.data.Rd man/create.autoencoder.irf.matrix.Rd man/write.scaling.factors.Rd man/combine.integrative.features.Rd man/apply.scaling.Rd man/calculate.scaling.Rd man/calculate.cis.matrix.Rd man/cluster.patients.Rd man/read.scaling.factors.Rd man/calculate.integrative.similarity.matrix.Rd

iSubGen documentation built on April 22, 2021, 5:11 p.m.