icenReg: Regression Models for Interval Censored Data

Regression models for interval censored data. Currently supports Cox-PH, proportional odds, and accelerated failure time models. Allows for both semi and fully parametric models (parametric only for accelerated failure time models). Includes functions for easy visual diagnostics of model fits and imputation of censored data.

Author
Clifford Anderson-Bergman; uses Marloes Maathuis's HeightMap algorithm (MLEcens::reduc)
Date of publication
2016-09-03 23:38:16
Maintainer
Clifford Anderson-Bergman <pistacliffcho@gmail.com>
License
LGPL (>= 2.0, < 3)
Version
1.3.6

View on CRAN

Man pages

diag_baseline
Compare parametric baseline distributions with...
diag_covar
Evaluate covariate effect for regression model
getFitEsts
Get Survival Curve Estimates from icenReg Model
getSCurves
Get Estimated Survival Curves from Semi-parametric Model for...
ic_np
Non-Parametric Estimator for Interval Censored Data
ic_par
Parametric Regression Models for Interval Censored Data
ic_sp
Semi-Parametric models for Interval Censored Data
imputeCens
Impute Interval Censored Data from icenReg Regression Model
IR_diabetes
Interval censored time from diabetes onset to diabetic...
makeCtrls_icsp
Control Parameters for ic_sp
miceData
Lung Tumor Interval Censored Data from Hoel and Walburg 1972
predict.icenReg_fit
Predictions from icenReg Regression Model
simCS_weib
Simulate Current Status Data
simDC_weib
Simulate Doubly Censored Data
simIC_weib
Simulates interval censored data from regression model with a...

Files in this package

icenReg
icenReg/inst
icenReg/inst/doc
icenReg/inst/doc/icenReg.Rnw
icenReg/inst/doc/icenReg.R
icenReg/inst/doc/icenReg.pdf
icenReg/src
icenReg/src/icenReg.cpp
icenReg/src/icenReg_files
icenReg/src/icenReg_files/bivariateNPMLE.h
icenReg/src/icenReg_files/myPAVAalgorithm.cpp
icenReg/src/icenReg_files/EMICM.cpp
icenReg/src/icenReg_files/regressionTransforms.cpp
icenReg/src/icenReg_files/bivariateNPMLE.cpp
icenReg/src/icenReg_files/ic_par_aft.cpp
icenReg/src/icenReg_files/ic_par.cpp
icenReg/src/icenReg_files/ic_par.h
icenReg/src/icenReg_files/ic_sp_ch.cpp
icenReg/src/icenReg_files/ic_sp_ch.h
icenReg/src/icenReg_files/ic_sp_gradDescent.cpp
icenReg/src/icenReg_files/ic_par_aft.h
icenReg/src/icenReg_files/experimentalCode.cpp
icenReg/src/icenReg_files/basicUtilities.cpp
icenReg/src/icenReg_files/EMICM.h
icenReg/src/icenReg_files/regressionTransforms.h
icenReg/NAMESPACE
icenReg/NEWS
icenReg/data
icenReg/data/IR_diabetes.RData
icenReg/data/miceData.RData
icenReg/R
icenReg/R/Utilities.R
icenReg/R/simulationFunctions.R
icenReg/R/referenceClasses.R
icenReg/R/optCliq.R
icenReg/R/user_functions.R
icenReg/R/dataRoxygen.R
icenReg/R/icenReg_CV.R
icenReg/vignettes
icenReg/vignettes/icenReg.Rnw
icenReg/vignettes/icenReg-015.pdf
icenReg/vignettes/icenReg-005.pdf
icenReg/MD5
icenReg/build
icenReg/build/vignette.rds
icenReg/DESCRIPTION
icenReg/man
icenReg/man/IR_diabetes.Rd
icenReg/man/diag_covar.Rd
icenReg/man/ic_sp.Rd
icenReg/man/ic_par.Rd
icenReg/man/predict.icenReg_fit.Rd
icenReg/man/ic_np.Rd
icenReg/man/miceData.Rd
icenReg/man/getSCurves.Rd
icenReg/man/simDC_weib.Rd
icenReg/man/simCS_weib.Rd
icenReg/man/makeCtrls_icsp.Rd
icenReg/man/simIC_weib.Rd
icenReg/man/imputeCens.Rd
icenReg/man/diag_baseline.Rd
icenReg/man/getFitEsts.Rd