idr: Irreproducible discovery rate
Version 1.2

This is a package for estimating the copula mixture model and plotting correspondence curves in "Measuring reproducibility of high-throughput experiments" (2011), Annals of Applied Statistics, Vol. 5, No. 3, 1752-1779, by Li, Brown, Huang, and Bickel

AuthorQunhua Li
Date of publication2014-09-04 07:00:27
MaintainerQunhua Li <qunhua.li@gmail.com>
LicenseGPL (>= 2.0)
Version1.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("idr")

Getting started

Package overview

Popular man pages

comp.uri: Compute the value of Psi and Psi' for a given t
est.IDR: Estimate the irreproducible discovery rate using the copula...
get.pseudo.mix: Compute the pseudo values of a mixture model from the...
idr-package: Irreproducible discovery rate
m.step.2normal: M-step for parameterized bivariate 2-component Gaussian...
salmon: Salmon data
simu.idr: Simulated data
See all...

All man pages Function index File listing

Man pages

comp.uri: Compute the value of Psi and Psi' for a given t
d.binormal: Log density of bivariate Gaussian distribution with symmetric...
e.step.2normal: E-step for parameterized bivariate 2-component Gaussian...
est.IDR: Estimate the irreproducible discovery rate using the copula...
get.correspondence: Compute correspondence profiles
get.pseudo.mix: Compute the pseudo values of a mixture model from the...
get.uri.2d: Compute the correspondence profile (Psi(t, v)) and the...
idr-package: Irreproducible discovery rate
loglik.2binormal: Compute log-likelihood of parameterized bivariate 2-component...
m.step.2normal: M-step for parameterized bivariate 2-component Gaussian...
salmon: Salmon data
select.IDR: Select observations according to IDR
simu.idr: Simulated data

Functions

comp.uri Man page Source code Source code
d.binormal Man page Source code Source code
e.step.2normal Man page Source code Source code
est.IDR Man page Source code Source code
get.correspondence Man page Source code Source code
get.pseudo.mix Man page Source code Source code
get.uri.2d Man page Source code Source code
idr Man page
idr-package Man page
loglik.2binormal Man page Source code Source code
m.step.2normal Man page Source code Source code
salmon Man page
select.IDR Man page Source code Source code Source code
simu.idr Man page

Files

NAMESPACE
data
data/simu.idr.rda
data/salmon.rda
R
R/select.IDR.R
R/get.correspondence.R
R/loglik.2binormal.R
R/all.R
R/get.uri.2d.R
R/m.step.2normal.R
R/get.pseudo.mix.R
R/est.IDR.R
R/e.step.2normal.R
R/d.binormal.R
R/comp.uri.R
MD5
DESCRIPTION
man
man/simu.idr.Rd
man/m.step.2normal.Rd
man/loglik.2binormal.Rd
man/est.IDR.Rd
man/salmon.Rd
man/e.step.2normal.Rd
man/comp.uri.Rd
man/get.correspondence.Rd
man/select.IDR.Rd
man/get.pseudo.mix.Rd
man/d.binormal.Rd
man/idr-package.Rd
man/get.uri.2d.Rd
idr documentation built on May 19, 2017, 2:03 p.m.

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