idr: Irreproducible discovery rate

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This is a package for estimating the copula mixture model and plotting correspondence curves in "Measuring reproducibility of high-throughput experiments" (2011), Annals of Applied Statistics, Vol. 5, No. 3, 1752-1779, by Li, Brown, Huang, and Bickel

Author
Qunhua Li
Date of publication
2014-09-04 07:00:27
Maintainer
Qunhua Li <qunhua.li@gmail.com>
License
GPL (>= 2.0)
Version
1.2

View on CRAN

Man pages

comp.uri
Compute the value of Psi and Psi' for a given t
d.binormal
Log density of bivariate Gaussian distribution with symmetric...
e.step.2normal
E-step for parameterized bivariate 2-component Gaussian...
est.IDR
Estimate the irreproducible discovery rate using the copula...
get.correspondence
Compute correspondence profiles
get.pseudo.mix
Compute the pseudo values of a mixture model from the...
get.uri.2d
Compute the correspondence profile (Psi(t, v)) and the...
idr-package
Irreproducible discovery rate
loglik.2binormal
Compute log-likelihood of parameterized bivariate 2-component...
m.step.2normal
M-step for parameterized bivariate 2-component Gaussian...
salmon
Salmon data
select.IDR
Select observations according to IDR
simu.idr
Simulated data

Files in this package

idr
idr/NAMESPACE
idr/data
idr/data/simu.idr.rda
idr/data/salmon.rda
idr/R
idr/R/select.IDR.R
idr/R/get.correspondence.R
idr/R/loglik.2binormal.R
idr/R/all.R
idr/R/get.uri.2d.R
idr/R/m.step.2normal.R
idr/R/get.pseudo.mix.R
idr/R/est.IDR.R
idr/R/e.step.2normal.R
idr/R/d.binormal.R
idr/R/comp.uri.R
idr/MD5
idr/DESCRIPTION
idr/man
idr/man/simu.idr.Rd
idr/man/m.step.2normal.Rd
idr/man/loglik.2binormal.Rd
idr/man/est.IDR.Rd
idr/man/salmon.Rd
idr/man/e.step.2normal.Rd
idr/man/comp.uri.Rd
idr/man/get.correspondence.Rd
idr/man/select.IDR.Rd
idr/man/get.pseudo.mix.Rd
idr/man/d.binormal.Rd
idr/man/idr-package.Rd
idr/man/get.uri.2d.Rd