igraph: Network Analysis and Visualization

Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.

AuthorSee AUTHORS file.
Date of publication2015-06-26 11:13:24
MaintainerGabor Csardi <csardi.gabor@gmail.com>
LicenseGPL (>= 2)
Version1.0.1
http://igraph.org

View on CRAN

Man pages

aaa-igraph-package: The igraph package

add_edges: Add edges to a graph

add_layout_: Add layout to graph

add_vertices: Add vertices to a graph

adjacent_vertices: Adjacent vertices of multiple vertices in a graph

all_simple_paths: List all simple paths from one source

alpha_centrality: Find Bonacich alpha centrality scores of network positions

are_adjacent: Are two vertices adjacent?

arpack: ARPACK eigenvector calculation

articulation_points: Articulation points of a graph

as_adjacency_matrix: Convert a graph to an adjacency matrix

as_adj_list: Adjacency lists

as.directed: Convert between directed and undirected graphs

as_edgelist: Convert a graph to an edge list

as_graphnel: Convert igraph graphs to graphNEL objects from the graph...

as_ids: Convert a vertex or edge sequence to an ordinary vector

as.igraph: Conversion to igraph

as_incidence_matrix: Incidence matrix of a bipartite graph

as_long_data_frame: Convert a graph to a long data frame

as_membership: Declare a numeric vector as a membership vector

assortativity: Assortativity coefficient

authority_score: Kleinberg's authority centrality scores.

automorphisms: Number of automorphisms

betweenness: Vertex and edge betweenness centrality

bfs: Breadth-first search

biconnected_components: Biconnected components

bipartite_mapping: Decide whether a graph is bipartite

bipartite_projection: Project a bipartite graph

canonical_permutation: Canonical permutation of a graph

categorical_pal: Palette for categories

centralize: Centralization of a graph

centr_betw: Centralize a graph according to the betweenness of vertices

centr_betw_tmax: Theoretical maximum for betweenness centralization

centr_clo: Centralize a graph according to the closeness of vertices

centr_clo_tmax: Theoretical maximum for closeness centralization

centr_degree: Centralize a graph according to the degrees of vertices

centr_degree_tmax: Theoretical maximum for degree centralization

centr_eigen: Centralize a graph according to the eigenvector centrality of...

centr_eigen_tmax: Theoretical maximum for betweenness centralization

c.igraph.es: Concatenate edge sequences

c.igraph.vs: Concatenate vertex sequences

cliques: The functions find cliques, ie. complete subgraphs in a graph

closeness: Closeness centrality of vertices

cluster_edge_betweenness: Community structure detection based on edge betweenness

cluster_fast_greedy: Community structure via greedy optimization of modularity

cluster_infomap: Infomap community finding

cluster_label_prop: Finding communities based on propagating labels

cluster_leading_eigen: Community structure detecting based on the leading...

cluster_louvain: Finding community structure by multi-level optimization of...

cluster_optimal: Optimal community structure

cluster_spinglass: Finding communities in graphs based on statistical meachanics

cluster_walktrap: Community strucure via short random walks

cocitation: Cocitation coupling

cohesive_blocks: Calculate Cohesive Blocks

communities: Functions to deal with the result of network community...

compare: Compares community structures using various metrics

complementer: Complementer of a graph

components: Connected components of a graph

component_wise: Component-wise layout

compose: Compose two graphs as binary relations

consensus_tree: Create a consensus tree from several hierarchical random...

console: The igraph console

constraint: Burt's constraint

contract: Contract several vertices into a single one

convex_hull: Convex hull of a set of vertices

coreness: K-core decomposition of graphs

count_isomorphisms: Count the number of isomorphic mappings between two graphs

count_motifs: Graph motifs

count_subgraph_isomorphisms: Count the isomorphic mappings between a graph and the...

count_triangles: Find triangles in graphs

curve_multiple: Optimal edge curvature when plotting graphs

decompose: Decompose a graph into components

degree: Degree and degree distribution of the vertices

delete_edge_attr: Delete an edge attribute

delete_edges: Delete edges from a graph

delete_graph_attr: Delete a graph attribute

delete_vertex_attr: Delete a vertex attribute

delete_vertices: Delete vertices from a graph

dfs: Depth-first search

diameter: Diameter of a graph

difference: Difference of two sets

difference.igraph: Difference of graphs

difference.igraph.es: Difference of edge sequences

difference.igraph.vs: Difference of vertex sequences

dim_select: Dimensionality selection for singular values using profile...

disjoint_union: Disjoint union of graphs

distances: Shortest (directed or undirected) paths between vertices

diverging_pal: Diverging palette

diversity: Graph diversity

dominator_tree: Dominator tree

dyad_census: Dyad census of a graph

E: Edges of a graph

each_edge: Rewires the endpoints of the edges of a graph to a random...

eccentricity: Eccentricity of the vertices in a graph

edge: Helper function for adding and deleting edges

edge_attr: Query edge attributes of a graph

edge_attr_names: List names of edge attributes

edge_attr-set: Set one or more edge attributes

edge_connectivity: Edge connectivity.

edge_density: Graph density

ego: Neighborhood of graph vertices

eigen_centrality: Find Eigenvector Centrality Scores of Network Positions

embed_adjacency_matrix: Spectral Embedding of Adjacency Matrices

embed_laplacian_matrix: Spectral Embedding of the Laplacian of a Graph

ends: Incident vertices of some graph edges

erdos.renyi.game: Generate random graphs according to the Erdos-Renyi model

fit_hrg: Fit a hierarchical random graph model

fit_power_law: Fitting a power-law distribution function to discrete data

gclust.app: Graph Clustering Using NMF (and no SVT) - Apparent Clusters

gclust.rsvt: Graph Clustering Using SVT and NMF - Clusters Implied by...

getAICc: Compute AIC based on a Poisson Approximation using the output...

get.edge.ids: Find the edge ids based on the incident vertices of the edges

girth: Girth of a graph

gorder: Order (number of vertices) of a graph

graph_: Convert object to a graph

graph_attr: Graph attributes of a graph

graph_attr_names: List names of graph attributes

graph_attr-set: Set all or some graph attributes

graph_from_adjacency_matrix: Create graphs from adjacency matrices

graph_from_adj_list: Create graphs from adjacency lists

graph_from_atlas: Create a graph from the Graph Atlas

graph_from_data_frame: Creating igraph graphs from data frames or vice-versa

graph_from_edgelist: Create a graph from an edge list matrix

graph_from_graphdb: Load a graph from the graph database for testing graph...

graph_from_graphnel: Convert graphNEL objects from the graph package to igraph

graph_from_incidence_matrix: Create graphs from an incidence matrix

graph_from_isomorphism_class: Create a graph from an isomorphism class

graph_from_lcf: Creating a graph from LCF notation

graph_from_literal: Creating (small) graphs via a simple interface

graphlet_basis: Graphlet decomposition of a graph

graph_version: Igraph data structure versions

groups: Groups of a vertex partitioning

gsize: The size of the graph (number of edges)

head_of: Head of the edge(s) in a graph

hrg: Create a hierarchical random graph from an igraph graph

hrg-methods: Hierarchical random graphs

hrg_tree: Create an igraph graph from a hierarchical random graph model

hub_score: Kleinberg's hub centrality scores.

identical_graphs: Decide if two graphs are identical

igraph-attribute-combination: How igraph functions handle attributes when the graph changes

igraph_demo: Run igraph demos, step by step

igraph-dollar: Getting and setting graph attributes, shortcut

igraph-es-attributes: Query or set attributes of the edges in an edge sequence

igraph-es-indexing: Indexing edge sequences

igraph-es-indexing2: Select edges and show their metadata

igraph-minus: Delete vertices or edges from a graph

igraph_options: Parameters for the igraph package

igraph_test: Run package tests

igraph_version: Query igraph's version string

igraph-vs-attributes: Query or set attributes of the vertices in a vertex sequence

igraph-vs-indexing: Indexing vertex sequences

igraph-vs-indexing2: Select vertices and show their metadata

incident: Incident edges of a vertex in a graph

incident_edges: Incident edges of multiple vertices in a graph

intersection: Intersection of two or more sets

intersection.igraph: Intersection of graphs

intersection.igraph.es: Intersection of edge sequences

intersection.igraph.vs: Intersection of vertex sequences

is_chordal: Chordality of a graph

is_dag: Directed acyclic graphs

is_degseq: Check if a degree sequence is valid for a multi-graph

is_directed: Check whether a graph is directed

is_graphical: Is a degree sequence graphical?

is_igraph: Is this object an igraph graph?

is_min_separator: Minumal vertex separators

is_named: Named graphs

isomorphic: Decide if two graphs are isomorphic

isomorphism_class: Isomorphism class of a graph

isomorphisms: Calculate all isomorphic mappings between the vertices of two...

is_separator: Vertex separators

is_weighted: Weighted graphs

ivs: Independent vertex sets

keeping_degseq: Graph rewiring while preserving the degree distribution

knn: Average nearest neighbor degree

laplacian_matrix: Graph Laplacian

layout_: Graph layouts

layout_as_bipartite: Simple two-row layout for bipartite graphs

layout_as_star: Generate coordinates to place the vertices of a graph in a...

layout_as_tree: The Reingold-Tilford graph layout algorithm

layout.deprecated: Deprecated layout functions

layout.fruchterman.reingold.grid: Grid Fruchterman-Reingold layout, this was removed from...

layout_in_circle: Graph layout with vertices on a circle.

layout_nicely: Choose an appropriate graph layout algorithm automatically

layout_on_grid: Simple grid layout

layout_on_sphere: Graph layout with vertices on the surface of a sphere

layout_randomly: Randomly place vertices on a plane or in 3d space

layout.spring: Spring layout, this was removed from igraph

layout.svd: SVD layout, this was removed from igraph

layout_with_dh: The Davidson-Harel layout algorithm

layout_with_drl: The DrL graph layout generator

layout_with_fr: The Fruchterman-Reingold layout algorithm

layout_with_gem: The GEM layout algorithm

layout_with_graphopt: The graphopt layout algorithm

layout_with_kk: The Kamada-Kawai layout algorithm

layout_with_lgl: Large Graph Layout

layout_with_mds: Graph layout by multidimensional scaling

layout_with_sugiyama: The Sugiyama graph layout generator

local_scan: Compute local scan statistics on graphs

make_: Make a new graph

make_bipartite_graph: Create a bipartite graph

make_chordal_ring: Create an extended chordal ring graph

make_clusters: Creates a communities object.

make_de_bruijn_graph: De Bruijn graphs

make_empty_graph: A graph with no edges

make_full_bipartite_graph: Create a full bipartite graph

make_full_citation_graph: Create a complete (full) citation graph

make_full_graph: Create a full graph

make_graph: Create an igraph graph from a list of edges, or a notable...

make_kautz_graph: Kautz graphs

make_lattice: Create a lattice graph

make_line_graph: Line graph of a graph

make_ring: Create a ring graph

make_star: Create a star graph, a tree with n vertices and n - 1 leaves

make_tree: Create tree graphs

matching: Graph matching

match_vertices: Match Graphs given a seeding of vertex correspondences

max_cardinality: Maximum cardinality search

max_flow: Maximum flow in a graph

merge_coords: Merging graph layouts

min_cut: Minimum cut in a graph

min_separators: Minimum size vertex separators

min_st_separators: Minimum size vertex separators

modularity.igraph: Modularity of a community structure of a graph

motifs: Graph motifs

mst: Minimum spanning tree

neighbors: Neighboring (adjacent) vertices in a graph

nexus: Query and download from the Nexus network repository

normalize: Normalize layout

norm_coords: Normalize coordinates for plotting graphs

page_rank: The Page Rank algorithm

path: Helper function to add or delete edges along a path

permute: Permute the vertices of a graph

pipe: Magrittr's pipes

plot.common: Drawing graphs

plot_dendrogram.communities: Community structure dendrogram plots

plot_dendrogram.igraphHRG: HRG dendrogram plot

plot.igraph: Plotting of graphs

plot.sir: Plotting the results on multiple SIR model runs

plus-.igraph: Add vertices, edges or another graph to a graph

power_centrality: Find Bonacich Power Centrality Scores of Network Positions

predict_edges: Predict edges based on a hierarchical random graph model

print.igraph: Print graphs to the terminal

print.igraph.es: Print an edge sequence to the screen

print.igraphHRG: Print a hierarchical random graph model to the screen

print.igraphHRGConsensus: Print a hierarchical random graph consensus tree to the...

print.igraph.vs: Show a vertex sequence on the screen

radius: Radius of a graph

random_walk: Random walk on a graph

read_graph: Reading foreign file formats

reciprocity: Reciprocity of graphs

rep.igraph: Replicate a graph multiple times

rev.igraph.es: Reverse the order in an edge sequence

rev.igraph.vs: Reverse the order in a vertex sequence

rewire: Rewiring edges of a graph

rglplot: 3D plotting of graphs with OpenGL

r_pal: The default R palette

running_mean: Running mean of a time series

sample_: Sample from a random graph model

sample_bipartite: Bipartite random graphs

sample_correlated_gnp: Generate a new random graph from a given graph by randomly...

sample_correlated_gnp_pair: Sample a pair of correlated G(n,p) random graphs

sample_degseq: Generate random graphs with a given degree sequence

sample_dirichlet: Sample from a Dirichlet distribution

sample_dot_product: Generate random graphs according to the random dot product...

sample_fitness: Random graphs from vertex fitness scores

sample_fitness_pl: Scale-free random graphs, from vertex fitness scores

sample_forestfire: Forest Fire Network Model

sample_gnm: Generate random graphs according to the G(n,m) Erdos-Renyi...

sample_gnp: Generate random graphs according to the G(n,p) Erdos-Renyi...

sample_grg: Geometric random graphs

sample_growing: Growing random graph generation

sample_hierarchical_sbm: Sample the hierarchical stochastic block model

sample_hrg: Sample from a hierarchical random graph model

sample_islands: A graph with subgraphs that are each a random graph.

sample_k_regular: Create a random regular graph

sample_last_cit: Random citation graphs

sample_motifs: Graph motifs

sample_pa: Generate scale-free graphs according to the Barabasi-Albert...

sample_pa_age: Generate an evolving random graph with preferential...

sample_pref: Trait-based random generation

sample_sbm: Sample stochastic block model

sample_seq: Sampling a random integer sequence

sample_smallworld: The Watts-Strogatz small-world model

sample_sphere_surface: Sample vectors uniformly from the surface of a sphere

sample_sphere_volume: Sample vectors uniformly from the volume of a sphere

sample_traits_callaway: Graph generation based on different vertex types

scan_stat: Scan statistics on a time series of graphs

scg: All-in-one Function for the SCG of Matrices and Graphs

scg_eps: Error of the spectral coarse graining (SCG) approximation

scg_group: SCG Problem Solver

scg-method: Spectral Coarse Graining

scg_semi_proj: Semi-Projectors

sequential_pal: Sequential palette

set_edge_attr: Set edge attributes

set_graph_attr: Set a graph attribute

set_vertex_attr: Set vertex attributes

shapes: Various vertex shapes when plotting igraph graphs

similarity: Similarity measures of two vertices

simplified: Constructor modifier to drop multiple and loop edges

simplify: Simple graphs

sir: SIR model on graphs

spectrum: Eigenvalues and eigenvectors of the adjacency matrix of a...

split_join_distance: Split-join distance of two community structures

srand: Deprecated function, used to set random seed of the C...

st_cuts: List all (s,t)-cuts of a graph

st_min_cuts: List all minimum (s,t)-cuts of a graph

stochastic_matrix: Stochastic matrix of a graph

strength: Strength or weighted vertex degree

subcomponent: In- or out- component of a vertex

subgraph: Subgraph of a graph

subgraph_centrality: Find subgraph centrality scores of network positions

subgraph_isomorphic: Decide if a graph is subgraph isomorphic to another one

subgraph_isomorphisms: All isomorphic mappings between a graph and subgraphs of...

sub-.igraph: Query and manipulate a graph as it were an adjacency matrix

sub-sub-.igraph: Query and manipulate a graph as it were an adjacency list

tail_of: Tails of the edge(s) in a graph

tkigraph: Experimental basic igraph GUI

tkplot: Interactive plotting of graphs

topo_sort: Topological sorting of vertices in a graph

transitivity: Transitivity of a graph

triad_census: Triad census, subgraphs with three vertices

unfold_tree: Convert a general graph into a forest

union: Union of two or more sets

union.igraph: Union of graphs

union.igraph.es: Union of edge sequences

union.igraph.vs: Union of vertex sequences

unique.igraph.es: Remove duplicate edges from an edge sequence

unique.igraph.vs: Remove duplicate vertices from a vertex sequence

upgrade_graph: Igraph data structure versions

V: Vertices of a graph

vertex: Helper function for adding and deleting vertices

vertex_attr: Query vertex attributes of a graph

vertex_attr_names: List names of vertex attributes

vertex_attr-set: Set one or more vertex attributes

vertex_connectivity: Vertex connectivity.

vertex.shape.pie: Using pie charts as vertices in graph plots

which_multiple: Find the multiple or loop edges in a graph

which_mutual: Find mutual edges in a directed graph

with_edge_: Constructor modifier to add edge attributes

with_graph_: Constructor modifier to add graph attributes

without_attr: Construtor modifier to remove all attributes from a graph

without_loops: Constructor modifier to drop loop edges

without_multiples: Constructor modifier to drop multiple edges

with_vertex_: Constructor modifier to add vertex attributes

write_graph: Writing the graph to a file in some format

Files in this package

igraph
igraph/inst
igraph/inst/my_html_library.tcl
igraph/inst/html_library.tcl
igraph/inst/CITATION
igraph/inst/tests
igraph/inst/tests/test_graph.density.R
igraph/inst/tests/test-old-data-type.R
igraph/inst/tests/test_alpha.centrality.R
igraph/inst/tests/test_correlated.R
igraph/inst/tests/test_dominator.tree.R
igraph/inst/tests/test_girth.R
igraph/inst/tests/test_edge.connectivity.R
igraph/inst/tests/test_get.shortest.paths.R
igraph/inst/tests/test_fartherst.nodes.R
igraph/inst/tests/test_callbacks.R
igraph/inst/tests/test_are.connected.R
igraph/inst/tests/test_articulation.points.R
igraph/inst/tests/test_operators.R
igraph/inst/tests/test_communities.R
igraph/inst/tests/test_operators4.R
igraph/inst/tests/test_bug-1073800-clique.R
igraph/inst/tests/test_indexing3.R
igraph/inst/tests/test_attributes.R
igraph/inst/tests/test_sdf.R
igraph/inst/tests/test_forestfire.R
igraph/inst/tests/test_neighborhood.R
igraph/inst/tests/test_decompose.graph.R
igraph/inst/tests/test_layout.mds.R
igraph/inst/tests/test_arpack.R
igraph/inst/tests/test_igraph.options.R
igraph/inst/tests/dyad.census.R
igraph/inst/tests/test_edge.betweenness.community.R
igraph/inst/tests/test_layout.fr.R
igraph/inst/tests/test_bonpow.R
igraph/inst/tests/test_graphlets.R
igraph/inst/tests/test_graph.subisomorphic.vf2.R
igraph/inst/tests/test-vs-es.R
igraph/inst/tests/test-vs-es-printing.R
igraph/inst/tests/test-weakref.R
igraph/inst/tests/test_largest.cliques.R
igraph/inst/tests/test_average.path.length.R
igraph/inst/tests/test_sample.R
igraph/inst/tests/test_is.bipartite.R
igraph/inst/tests/test_iterators.R
igraph/inst/tests/test_graph.atlas.R
igraph/inst/tests/test_bug-1019624.R
igraph/inst/tests/test_graph.data.frame.R
igraph/inst/tests/test_minimal.st.separators.R
igraph/inst/tests/test_evcent.R
igraph/inst/tests/test_delete.vertices.R
igraph/inst/tests/test_dot.product.game.R
igraph/inst/tests/test_optimal.community.R
igraph/inst/tests/test_assortativity.R
igraph/inst/tests/test-random_walk.R
igraph/inst/tests/test_graph.de.bruijn.R
igraph/inst/tests/test_neighbors.R
igraph/inst/tests/test_authority.score.R
igraph/inst/tests/test_edgenames.R
igraph/inst/tests/test-make_graph.R
igraph/inst/tests/test_bug-1073705-indexing.R
igraph/inst/tests/test_pajek.R
igraph/inst/tests/test_independent.vertex.sets.R
igraph/inst/tests/test_dimSelect.R
igraph/inst/tests/test-isomorphism.R
igraph/inst/tests/test_bug-1033045.R
igraph/inst/tests/test_graph.maxflow.R
igraph/inst/tests/test_multilevel.community.R
igraph/inst/tests/test_adjacency.spectral.embedding.R
igraph/inst/tests/test_operators3.R
igraph/inst/tests/test_scg.R
igraph/inst/tests/test_as.directed.R
igraph/inst/tests/test_layout.gem.R
igraph/inst/tests/test_laplacian.spectral.embedding.R
igraph/inst/tests/test_closeness.R
igraph/inst/tests/test_walktrap.community.R
igraph/inst/tests/test_hsbm.R
igraph/inst/tests/test-version.R
igraph/inst/tests/test_graphNEL.R
igraph/inst/tests/test_label.propagation.community.R
igraph/inst/tests/test_fastgreedy.community.R
igraph/inst/tests/test-vs-es-quirks.R
igraph/inst/tests/test_graph.adhesion.R
igraph/inst/tests/test_graph.formula.R
igraph/inst/tests/test-new-layout-api.R
igraph/inst/tests/test_minimum.size.separators.R
igraph/inst/tests/test_graph.isoclass.R
igraph/inst/tests/test_indexing.R
igraph/inst/tests/test_triangles.R
igraph/inst/tests/test_delete.edges.R
igraph/inst/tests/test_ba.game.R
igraph/inst/tests/test_motifs.R
igraph/inst/tests/test_graph.knn.R
igraph/inst/tests/test-notable.R
igraph/inst/tests/test_constraint.R
igraph/inst/tests/test_degree.R
igraph/inst/tests/test_graph.complementer.R
igraph/inst/tests/test_clusters.R
igraph/inst/tests/test_graph.subisomorphic.lad.R
igraph/inst/tests/test_graph.adjacency.R
igraph/inst/tests/test_betweenness.R
igraph/inst/tests/test_as.undirected.R
igraph/inst/tests/test-index-es.R
igraph/inst/tests/test_bipartite.random.game.R
igraph/inst/tests/test_count.multiple.R
igraph/inst/tests/test-make.R
igraph/inst/tests/test_dyad.census.R
igraph/inst/tests/test_modularity_matrix.R
igraph/inst/tests/test_graph.bipartite.R
igraph/inst/tests/test-constructor-modifiers.R
igraph/inst/tests/test_edge.betweenness.R
igraph/inst/tests/test_graph.mincut.R
igraph/inst/tests/celegansneural.gml.gz
igraph/inst/tests/football.gml.gz
igraph/inst/tests/test_is.chordal.R
igraph/inst/tests/test_watts.strogatz.game.R
igraph/inst/tests/test_transitivity.R
igraph/inst/tests/test-versions.R
igraph/inst/tests/test_graph.edgelist.R
igraph/inst/tests/test_sir.R
igraph/inst/tests/test_get.adjacency.R
igraph/inst/tests/test_graph.kautz.R
igraph/inst/tests/test_cliques.R
igraph/inst/tests/test_indexing2.R
igraph/inst/tests/test_graph.compose.R
igraph/inst/tests/test_sgm.R
igraph/inst/tests/test_graph.bfs.R
igraph/inst/tests/test_scan.R
igraph/inst/tests/test_get.adjlist.R
igraph/inst/tests/test_bug-1032819.R
igraph/inst/tests/test_diameter.R
igraph/inst/tests/test_biconnected.components.R
igraph/inst/tests/test_contract.vertices.R
igraph/inst/tests/test_graph.coreness.R
igraph/inst/tests/test_print.R
igraph/inst/tests/test_sbm.game.R
igraph/inst/tests/test_get.edgelist.R
igraph/inst/tests/test_psumtree.R
igraph/inst/tests/test_maximal_cliques.R
igraph/inst/tests/test-vs-indexing-lapply.R
igraph/inst/tests/test_add.vertices.R
igraph/inst/tests/power.gml.gz
igraph/inst/tests/test_graph.adjlist.R
igraph/inst/tests/test_leading.eigenvector.community.R
igraph/inst/tests/test_hrg.R
igraph/inst/tests/test-vs-operators.R
igraph/inst/tests/test_layout.kk.R
igraph/inst/tests/test_graph.eigen.R
igraph/inst/tests/test_bipartite.projection.R
igraph/inst/tests/test_get.edge.R
igraph/inst/tests/test_degree.sequence.game.R
igraph/inst/tests/test_get.diameter.R
igraph/inst/tests/test_get.incidence.R
igraph/inst/tests/test_layout.merge.R
igraph/inst/tests/test_add.edges.R
igraph/inst/tests/test_sphere.R
igraph/inst/tests/test_all.st.cuts.R
igraph/inst/tests/test_unfold.tree.R
igraph/inst/tests/test_canonical.permutation.R
igraph/inst/tests/test_largest.independent.vertex.sets.R
igraph/inst/tests/test_get.all.shortest.paths.R
igraph/inst/AUTHORS
igraph/inst/html_library.license.terms
igraph/inst/igraph2.gif
igraph/inst/NEWS.md
igraph/inst/README.md
igraph/inst/tkigraph_help
igraph/inst/tkigraph_help/index.html
igraph/inst/tkigraph_help/communities.html
igraph/inst/tkigraph_help/style.css
igraph/inst/tkigraph_help/tkigraph-main.gif
igraph/inst/benchmarks
igraph/inst/benchmarks/time_dirSelect.R
igraph/inst/benchmarks/time_fr_layout.R
igraph/inst/benchmarks/correlated.R
igraph/inst/benchmarks/time_sir.R
igraph/inst/benchmarks/local.scan.R
igraph/inst/benchmarks/time_kk_layout.R
igraph/inst/benchmarks/time_sgm.R
igraph/inst/benchmarks/time_print.R
igraph/inst/benchmarks/time_call.R
igraph/inst/igraph.gif
igraph/configure.ac
igraph/src
igraph/src/NetDataTypes.h
igraph/src/bignum.h
igraph/src/walktrap_communities.cpp
igraph/src/bliss_partition.hh
igraph/src/bliss_defs.hh
igraph/src/infomap_FlowGraph.cc
igraph/src/DensityGrid_3d.h
igraph/src/cliques.c
igraph/src/matrix.c
igraph/src/bigint.c
igraph/src/gengraph_vertex_cover.h
igraph/src/gengraph_header.h
igraph/src/foreign-pajek-lexer.c
igraph/src/foreign-ncol-lexer.c
igraph/src/foreign-dl-parser.c
igraph/src/igraph_math.h
igraph/src/distances.c
igraph/src/glpk_support.c
igraph/src/igraph_blas_internal.h
igraph/src/hrg_splittree_eq.h
igraph/src/dsgets.f
igraph/src/drl_graph_3d.h
igraph/src/walktrap_graph.cpp
igraph/src/walktrap.cpp
igraph/src/gengraph_powerlaw.cpp
igraph/src/gengraph_degree_sequence.h
igraph/src/layout_gem.c
igraph/src/conversion.c
igraph/src/lazyeval.c
igraph/src/scg.c
igraph/src/foreign-pajek-lexer.l
igraph/src/separators.c
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igraph/src/AMD/Source/amd_post_tree.c
igraph/src/AMD/Makefile
igraph/src/AMD/README.txt
igraph/src/AMD/Include
igraph/src/AMD/Include/amd.h
igraph/src/AMD/Include/amd_internal.h
igraph/src/triangles_template.h
igraph/src/gengraph_box_list.cpp
igraph/src/layout_dh.c
igraph/src/Makevars.win
igraph/src/gengraph_box_list.h
igraph/src/COLAMD
igraph/src/COLAMD/Source
igraph/src/COLAMD/Source/colamd.c
igraph/src/COLAMD/Source/colamd_global.c
igraph/src/COLAMD/Makefile
igraph/src/COLAMD/README.txt
igraph/src/COLAMD/Include
igraph/src/COLAMD/Include/colamd.h
igraph/src/scg_utils.c
igraph/src/bignum.c
igraph/src/games.c
igraph/src/maximal_cliques.c
igraph/src/igraph_buckets.c
igraph/src/matrix.pmt
igraph/src/foreign-gml-parser.y
igraph/src/igraph_marked_queue.c
igraph/src/triangles_template1.h
igraph/src/foreign-dl-lexer.l
igraph/src/igraph_grid.c
igraph/src/infomap.cc
igraph/src/cohesive_blocks.c
igraph/src/drl_Node.h
igraph/src/pottsmodel_2.cpp
igraph/src/foreign-lgl-parser.y
igraph/src/bliss_timer.hh
igraph/src/bliss_eqrefhash.cc
igraph/src/glet.c
igraph/src/fast_community.c
igraph/src/gengraph_degree_sequence.cpp
igraph/src/type_indexededgelist.c
igraph/src/dneupd.f
igraph/src/foreign-dl-lexer.c
igraph/src/foreign-ncol-parser.h
igraph/src/bliss_utils.hh
igraph/src/DensityGrid.h
igraph/src/gengraph_graph_molloy_optimized.h
igraph/src/adjlist.c
igraph/src/NetDataTypes.cpp
igraph/src/dnapps.f
igraph/src/drl_layout.h
igraph/src/foreign-ncol-header.h
igraph/src/lapack.c
igraph/src/atlas-edges.h
igraph/src/dsconv.f
igraph/src/rinterface.c
igraph/src/cs
igraph/src/cs/cs_house.c
igraph/src/cs/cs_ipvec.c
igraph/src/cs/cs_qr.c
igraph/src/cs/cs_post.c
igraph/src/cs/cs_permute.c
igraph/src/cs/cs_ereach.c
igraph/src/cs/cs_multiply.c
igraph/src/cs/cs_leaf.c
igraph/src/cs/cs_ltsolve.c
igraph/src/cs/cs_updown.c
igraph/src/cs/cs_util.c
igraph/src/cs/cs_cumsum.c
igraph/src/cs/cs_fkeep.c
igraph/src/cs/cs_chol.c
igraph/src/cs/cs_randperm.c
igraph/src/cs/cs_counts.c
igraph/src/cs/cs_cholsol.c
igraph/src/cs/cs_norm.c
igraph/src/cs/cs_print.c
igraph/src/cs/cs_etree.c
igraph/src/cs/cs_entry.c
igraph/src/cs/cs_load.c
igraph/src/cs/cs_droptol.c
igraph/src/cs/cs_qrsol.c
igraph/src/cs/cs_add.c
igraph/src/cs/cs_usolve.c
igraph/src/cs/cs_malloc.c
igraph/src/cs/cs_lu.c
igraph/src/cs/cs_maxtrans.c
igraph/src/cs/cs_symperm.c
igraph/src/cs/cs_lusol.c
igraph/src/cs/cs_schol.c
igraph/src/cs/cs_transpose.c
igraph/src/cs/cs.h
igraph/src/cs/cs_spsolve.c
igraph/src/cs/cs_happly.c
igraph/src/cs/cs_compress.c
igraph/src/cs/cs_reach.c
igraph/src/cs/cs_pvec.c
igraph/src/cs/cs_dfs.c
igraph/src/cs/cs_dupl.c
igraph/src/cs/UFconfig.h
igraph/src/cs/cs_tdfs.c
igraph/src/cs/cs_amd.c
igraph/src/cs/cs_scatter.c
igraph/src/cs/cs_pinv.c
igraph/src/cs/cs_lsolve.c
igraph/src/cs/cs_utsolve.c
igraph/src/cs/cs_dmperm.c
igraph/src/cs/cs_dropzeros.c
igraph/src/cs/cs_scc.c
igraph/src/cs/cs_gaxpy.c
igraph/src/cs/cs_sqr.c
igraph/src/drl_graph.h
igraph/src/foreign-ncol-parser.y
igraph/src/dmout.f
igraph/src/foreign-dl-parser.y
igraph/src/walktrap_heap.h
igraph/src/sparsemat.c
igraph/src/dseigt.f
igraph/src/dneigh.f
igraph/src/igraph_f2c.h
igraph/src/foreign-lgl-parser.c
igraph/src/fortran_intrinsics.c
igraph/src/bigint.h
igraph/src/version.c
igraph/src/igraph_hrg.cc
igraph/src/include
igraph/src/include/igraph_random.h
igraph/src/include/igraph_heap.h
igraph/src/include/igraph_array.h
igraph/src/include/igraph_lsap.h
igraph/src/include/igraph_vector_type.h
igraph/src/include/igraph_matrix.h
igraph/src/include/igraph_psumtree.h
igraph/src/include/igraph_embedding.h
igraph/src/include/igraph_structural.h
igraph/src/include/igraph_datatype.h
igraph/src/include/igraph_pmt.h
igraph/src/include/igraph_threading.h.in
igraph/src/include/igraph_transitivity.h
igraph/src/include/igraph_paths.h
igraph/src/include/igraph_bipartite.h
igraph/src/include/igraph_spmatrix.h
igraph/src/include/igraph_matrix_pmt.h
igraph/src/include/igraph_attributes.h
igraph/src/include/igraph_cocitation.h
igraph/src/include/igraph_version.h.in
igraph/src/include/igraph_arpack.h
igraph/src/include/igraph_scg.h
igraph/src/include/igraph_conversion.h
igraph/src/include/igraph_graphlets.h
igraph/src/include/igraph_eigen.h
igraph/src/include/igraph_vector_pmt.h
igraph/src/include/igraph_epidemics.h
igraph/src/include/igraph_scan.h
igraph/src/include/igraph_centrality.h
igraph/src/include/igraph_pmt_off.h
igraph/src/include/igraph_iterators.h
igraph/src/include/igraph_error.h
igraph/src/include/igraph_components.h
igraph/src/include/igraph_hrg.h
igraph/src/include/igraph_interface.h
igraph/src/include/igraph_motifs.h
igraph/src/include/igraph_flow.h
igraph/src/include/igraph_vector.h
igraph/src/include/igraph_mixing.h
igraph/src/include/igraph_games.h
igraph/src/include/igraph_complex.h
igraph/src/include/igraph.h
igraph/src/include/igraph_stack.h
igraph/src/include/igraph_nongraph.h
igraph/src/include/igraph_foreign.h
igraph/src/include/igraph_dqueue_pmt.h
igraph/src/include/igraph_qsort.h
igraph/src/include/igraph_stack_pmt.h
igraph/src/include/igraph_topology.h
igraph/src/include/igraph_visitor.h
igraph/src/include/igraph_neighborhood.h
igraph/src/include/igraph_strvector.h
igraph/src/include/igraph_community.h
igraph/src/include/igraph_matching.h
igraph/src/include/igraph_separators.h
igraph/src/include/igraph_microscopic_update.h
igraph/src/include/igraph_constructors.h
igraph/src/include/igraph_layout.h
igraph/src/include/igraph_lapack.h
igraph/src/include/igraph_array_pmt.h
igraph/src/include/igraph_blas.h
igraph/src/include/igraph_types.h
igraph/src/include/igraph_cliques.h
igraph/src/include/igraph_dqueue.h
igraph/src/include/igraph_memory.h
igraph/src/include/igraph_adjlist.h
igraph/src/include/igraph_vector_ptr.h
igraph/src/include/igraph_progress.h
igraph/src/include/igraph_interrupt.h
igraph/src/include/igraph_statusbar.h
igraph/src/include/igraph_sparsemat.h
igraph/src/include/igraph_operators.h
igraph/src/include/igraph_heap_pmt.h
igraph/src/include/igraph_cohesive_blocks.h
igraph/src/include/igraph_constants.h
igraph/src/dvout.f
igraph/src/igraph_types_internal.h
igraph/NAMESPACE
igraph/demo
igraph/demo/hrg.R
igraph/demo/centrality.R
igraph/demo/cohesive.R
igraph/demo/00Index
igraph/demo/community.R
igraph/demo/smallworld.R
igraph/demo/crashR.R
igraph/R
igraph/R/zzz-deprecate.R igraph/R/scan.R igraph/R/decomposition.R igraph/R/auto.R igraph/R/palette.R igraph/R/games.R igraph/R/utils.R igraph/R/printr.R igraph/R/attributes.R igraph/R/operators.R igraph/R/structural.properties.R igraph/R/scg.R igraph/R/minimum.spanning.tree.R igraph/R/structure.info.R igraph/R/lazyeval.R igraph/R/epi.R igraph/R/hrg.R
igraph/R/auto.R.in
igraph/R/versions.R igraph/R/simple.R igraph/R/plot.R igraph/R/triangles.R igraph/R/sir.R igraph/R/indexing.R igraph/R/topology.R igraph/R/foreign.R igraph/R/layout.R igraph/R/cliques.R igraph/R/par.R igraph/R/assortativity.R igraph/R/rewire.R igraph/R/plot.shapes.R igraph/R/weakref.R igraph/R/sgm.R igraph/R/igraph-package.R igraph/R/embedding.R igraph/R/cohesive.blocks.R igraph/R/components.R igraph/R/centrality.R igraph/R/fit.R igraph/R/make.R igraph/R/basic.R igraph/R/test.R igraph/R/socnet.R igraph/R/data_frame.R igraph/R/print.R igraph/R/conversion.R igraph/R/paths.R igraph/R/community.R igraph/R/demo.R igraph/R/sparsedf.R igraph/R/layout_drl.R igraph/R/mgclust.R igraph/R/package.R igraph/R/interface.R igraph/R/console.R igraph/R/uuid.R igraph/R/plot.common.R igraph/R/similarity.R igraph/R/bipartite.R igraph/R/motifs.R igraph/R/other.R igraph/R/pp.R igraph/R/centralization.R igraph/R/flow.R igraph/R/iterators.R igraph/R/cocitation.R igraph/R/incidence.R igraph/R/random_walk.R igraph/R/glet.R igraph/R/nexus.R igraph/R/tkplot.R igraph/R/adjacency.R igraph/R/degseq.R
igraph/MD5
igraph/DESCRIPTION
igraph/configure
igraph/man
igraph/man/make_full_citation_graph.Rd igraph/man/subgraph_centrality.Rd igraph/man/hrg_tree.Rd igraph/man/graph_.Rd igraph/man/convex_hull.Rd igraph/man/motifs.Rd igraph/man/add_vertices.Rd igraph/man/without_loops.Rd igraph/man/sample_pref.Rd igraph/man/is_weighted.Rd igraph/man/layout_with_mds.Rd igraph/man/add_edges.Rd igraph/man/igraph_options.Rd igraph/man/read_graph.Rd igraph/man/min_cut.Rd igraph/man/pipe.Rd igraph/man/make_clusters.Rd igraph/man/is_degseq.Rd igraph/man/compose.Rd igraph/man/incident.Rd igraph/man/sample_k_regular.Rd igraph/man/layout_with_gem.Rd igraph/man/distances.Rd igraph/man/rev.igraph.vs.Rd igraph/man/canonical_permutation.Rd igraph/man/layout_with_fr.Rd igraph/man/incident_edges.Rd igraph/man/cluster_leading_eigen.Rd igraph/man/get.edge.ids.Rd igraph/man/sample_hierarchical_sbm.Rd igraph/man/graphlet_basis.Rd igraph/man/path.Rd igraph/man/vertex.shape.pie.Rd igraph/man/sample_.Rd igraph/man/disjoint_union.Rd igraph/man/layout_on_sphere.Rd igraph/man/sample_sphere_surface.Rd igraph/man/layout_as_bipartite.Rd igraph/man/sample_dirichlet.Rd igraph/man/delete_graph_attr.Rd igraph/man/make_chordal_ring.Rd igraph/man/erdos.renyi.game.Rd igraph/man/scg_group.Rd igraph/man/layout_with_kk.Rd igraph/man/bfs.Rd igraph/man/intersection.igraph.Rd igraph/man/laplacian_matrix.Rd igraph/man/embed_laplacian_matrix.Rd igraph/man/sample_grg.Rd igraph/man/difference.igraph.Rd igraph/man/centr_eigen_tmax.Rd igraph/man/layout.fruchterman.reingold.grid.Rd igraph/man/knn.Rd igraph/man/add_layout_.Rd igraph/man/automorphisms.Rd igraph/man/sample_correlated_gnp.Rd igraph/man/layout_nicely.Rd igraph/man/edge_density.Rd igraph/man/intersection.igraph.vs.Rd igraph/man/cluster_infomap.Rd igraph/man/diversity.Rd igraph/man/unfold_tree.Rd igraph/man/union.igraph.Rd igraph/man/dominator_tree.Rd igraph/man/norm_coords.Rd igraph/man/fit_power_law.Rd igraph/man/rep.igraph.Rd igraph/man/as.igraph.Rd igraph/man/layout.svd.Rd igraph/man/shapes.Rd 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igraph/man/with_edge_.Rd igraph/man/is_directed.Rd igraph/man/layout_with_drl.Rd igraph/man/make_de_bruijn_graph.Rd igraph/man/union.igraph.es.Rd igraph/man/authority_score.Rd igraph/man/layout_in_circle.Rd igraph/man/layout_with_lgl.Rd igraph/man/sample_growing.Rd igraph/man/getAICc.Rd igraph/man/scg-method.Rd igraph/man/cluster_label_prop.Rd igraph/man/constraint.Rd igraph/man/complementer.Rd igraph/man/assortativity.Rd igraph/man/sample_fitness_pl.Rd igraph/man/sample_islands.Rd igraph/man/transitivity.Rd igraph/man/srand.Rd igraph/man/arpack.Rd igraph/man/sample_gnp.Rd igraph/man/sample_fitness.Rd igraph/man/radius.Rd igraph/man/igraph_demo.Rd igraph/man/set_graph_attr.Rd igraph/man/predict_edges.Rd igraph/man/plot.common.Rd igraph/man/graph_from_graphdb.Rd igraph/man/subgraph_isomorphic.Rd igraph/man/igraph_test.Rd igraph/man/is_separator.Rd igraph/man/decompose.Rd igraph/man/closeness.Rd igraph/man/which_mutual.Rd igraph/man/gclust.app.Rd igraph/man/with_vertex_.Rd 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igraph/man/graph_from_edgelist.Rd igraph/man/biconnected_components.Rd igraph/man/make_graph.Rd igraph/man/make_bipartite_graph.Rd igraph/man/hrg-methods.Rd igraph/man/random_walk.Rd igraph/man/igraph-es-attributes.Rd igraph/man/edge.Rd igraph/man/st_min_cuts.Rd igraph/man/layout_.Rd igraph/man/cohesive_blocks.Rd igraph/man/layout_with_sugiyama.Rd igraph/man/tail_of.Rd igraph/man/centr_eigen.Rd igraph/man/graph_from_literal.Rd igraph/man/make_ring.Rd igraph/man/sample_last_cit.Rd igraph/man/igraph-vs-indexing2.Rd igraph/man/coreness.Rd igraph/man/as_edgelist.Rd igraph/man/print.igraph.vs.Rd igraph/man/permute.Rd igraph/man/make_full_bipartite_graph.Rd igraph/man/print.igraph.es.Rd igraph/man/vertex_attr_names.Rd igraph/man/count_isomorphisms.Rd igraph/man/sample_correlated_gnp_pair.Rd igraph/man/matching.Rd igraph/man/union.igraph.vs.Rd igraph/man/keeping_degseq.Rd igraph/man/subcomponent.Rd igraph/man/make_lattice.Rd igraph/man/groups.Rd igraph/man/dyad_census.Rd 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igraph/man/diameter.Rd igraph/man/vertex_attr.Rd igraph/man/betweenness.Rd igraph/man/centr_betw_tmax.Rd igraph/man/local_scan.Rd igraph/man/igraph-attribute-combination.Rd igraph/man/eigen_centrality.Rd igraph/man/intersection.igraph.es.Rd igraph/man/match_vertices.Rd igraph/man/bipartite_mapping.Rd igraph/man/vertex.Rd igraph/man/is_igraph.Rd igraph/man/fit_hrg.Rd igraph/man/as_graphnel.Rd igraph/man/layout_as_star.Rd igraph/man/normalize.Rd igraph/man/count_motifs.Rd igraph/man/curve_multiple.Rd igraph/man/graph_attr_names.Rd igraph/man/delete_vertex_attr.Rd igraph/man/simplify.Rd igraph/man/centr_clo_tmax.Rd igraph/man/triad_census.Rd igraph/man/each_edge.Rd igraph/man/as_incidence_matrix.Rd igraph/man/centr_betw.Rd igraph/man/layout_on_grid.Rd igraph/man/all_simple_paths.Rd igraph/man/difference.igraph.vs.Rd igraph/man/graph_attr-set.Rd igraph/man/split_join_distance.Rd igraph/man/sample_dot_product.Rd igraph/man/stochastic_matrix.Rd igraph/man/print.igraphHRG.Rd 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igraph/configure.win

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