igraph: Network Analysis and Visualization

Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.

AuthorSee AUTHORS file.
Date of publication2015-06-26 11:13:24
MaintainerGabor Csardi <csardi.gabor@gmail.com>
LicenseGPL (>= 2)
Version1.0.1
http://igraph.org

View on CRAN

Man pages

aaa-igraph-package: The igraph package

add_edges: Add edges to a graph

add_layout_: Add layout to graph

add_vertices: Add vertices to a graph

adjacent_vertices: Adjacent vertices of multiple vertices in a graph

all_simple_paths: List all simple paths from one source

alpha_centrality: Find Bonacich alpha centrality scores of network positions

are_adjacent: Are two vertices adjacent?

arpack: ARPACK eigenvector calculation

articulation_points: Articulation points of a graph

as_adjacency_matrix: Convert a graph to an adjacency matrix

as_adj_list: Adjacency lists

as.directed: Convert between directed and undirected graphs

as_edgelist: Convert a graph to an edge list

as_graphnel: Convert igraph graphs to graphNEL objects from the graph...

as_ids: Convert a vertex or edge sequence to an ordinary vector

as.igraph: Conversion to igraph

as_incidence_matrix: Incidence matrix of a bipartite graph

as_long_data_frame: Convert a graph to a long data frame

as_membership: Declare a numeric vector as a membership vector

assortativity: Assortativity coefficient

authority_score: Kleinberg's authority centrality scores.

automorphisms: Number of automorphisms

betweenness: Vertex and edge betweenness centrality

bfs: Breadth-first search

biconnected_components: Biconnected components

bipartite_mapping: Decide whether a graph is bipartite

bipartite_projection: Project a bipartite graph

canonical_permutation: Canonical permutation of a graph

categorical_pal: Palette for categories

centralize: Centralization of a graph

centr_betw: Centralize a graph according to the betweenness of vertices

centr_betw_tmax: Theoretical maximum for betweenness centralization

centr_clo: Centralize a graph according to the closeness of vertices

centr_clo_tmax: Theoretical maximum for closeness centralization

centr_degree: Centralize a graph according to the degrees of vertices

centr_degree_tmax: Theoretical maximum for degree centralization

centr_eigen: Centralize a graph according to the eigenvector centrality of...

centr_eigen_tmax: Theoretical maximum for betweenness centralization

c.igraph.es: Concatenate edge sequences

c.igraph.vs: Concatenate vertex sequences

cliques: The functions find cliques, ie. complete subgraphs in a graph

closeness: Closeness centrality of vertices

cluster_edge_betweenness: Community structure detection based on edge betweenness

cluster_fast_greedy: Community structure via greedy optimization of modularity

cluster_infomap: Infomap community finding

cluster_label_prop: Finding communities based on propagating labels

cluster_leading_eigen: Community structure detecting based on the leading...

cluster_louvain: Finding community structure by multi-level optimization of...

cluster_optimal: Optimal community structure

cluster_spinglass: Finding communities in graphs based on statistical meachanics

cluster_walktrap: Community strucure via short random walks

cocitation: Cocitation coupling

cohesive_blocks: Calculate Cohesive Blocks

communities: Functions to deal with the result of network community...

compare: Compares community structures using various metrics

complementer: Complementer of a graph

components: Connected components of a graph

component_wise: Component-wise layout

compose: Compose two graphs as binary relations

consensus_tree: Create a consensus tree from several hierarchical random...

console: The igraph console

constraint: Burt's constraint

contract: Contract several vertices into a single one

convex_hull: Convex hull of a set of vertices

coreness: K-core decomposition of graphs

count_isomorphisms: Count the number of isomorphic mappings between two graphs

count_motifs: Graph motifs

count_subgraph_isomorphisms: Count the isomorphic mappings between a graph and the...

count_triangles: Find triangles in graphs

curve_multiple: Optimal edge curvature when plotting graphs

decompose: Decompose a graph into components

degree: Degree and degree distribution of the vertices

delete_edge_attr: Delete an edge attribute

delete_edges: Delete edges from a graph

delete_graph_attr: Delete a graph attribute

delete_vertex_attr: Delete a vertex attribute

delete_vertices: Delete vertices from a graph

dfs: Depth-first search

diameter: Diameter of a graph

difference: Difference of two sets

difference.igraph: Difference of graphs

difference.igraph.es: Difference of edge sequences

difference.igraph.vs: Difference of vertex sequences

dim_select: Dimensionality selection for singular values using profile...

disjoint_union: Disjoint union of graphs

distances: Shortest (directed or undirected) paths between vertices

diverging_pal: Diverging palette

diversity: Graph diversity

dominator_tree: Dominator tree

dyad_census: Dyad census of a graph

E: Edges of a graph

each_edge: Rewires the endpoints of the edges of a graph to a random...

eccentricity: Eccentricity of the vertices in a graph

edge: Helper function for adding and deleting edges

edge_attr: Query edge attributes of a graph

edge_attr_names: List names of edge attributes

edge_attr-set: Set one or more edge attributes

edge_connectivity: Edge connectivity.

edge_density: Graph density

ego: Neighborhood of graph vertices

eigen_centrality: Find Eigenvector Centrality Scores of Network Positions

embed_adjacency_matrix: Spectral Embedding of Adjacency Matrices

embed_laplacian_matrix: Spectral Embedding of the Laplacian of a Graph

ends: Incident vertices of some graph edges

erdos.renyi.game: Generate random graphs according to the Erdos-Renyi model

fit_hrg: Fit a hierarchical random graph model

fit_power_law: Fitting a power-law distribution function to discrete data

gclust.app: Graph Clustering Using NMF (and no SVT) - Apparent Clusters

gclust.rsvt: Graph Clustering Using SVT and NMF - Clusters Implied by...

getAICc: Compute AIC based on a Poisson Approximation using the output...

get.edge.ids: Find the edge ids based on the incident vertices of the edges

girth: Girth of a graph

gorder: Order (number of vertices) of a graph

graph_: Convert object to a graph

graph_attr: Graph attributes of a graph

graph_attr_names: List names of graph attributes

graph_attr-set: Set all or some graph attributes

graph_from_adjacency_matrix: Create graphs from adjacency matrices

graph_from_adj_list: Create graphs from adjacency lists

graph_from_atlas: Create a graph from the Graph Atlas

graph_from_data_frame: Creating igraph graphs from data frames or vice-versa

graph_from_edgelist: Create a graph from an edge list matrix

graph_from_graphdb: Load a graph from the graph database for testing graph...

graph_from_graphnel: Convert graphNEL objects from the graph package to igraph

graph_from_incidence_matrix: Create graphs from an incidence matrix

graph_from_isomorphism_class: Create a graph from an isomorphism class

graph_from_lcf: Creating a graph from LCF notation

graph_from_literal: Creating (small) graphs via a simple interface

graphlet_basis: Graphlet decomposition of a graph

graph_version: Igraph data structure versions

groups: Groups of a vertex partitioning

gsize: The size of the graph (number of edges)

head_of: Head of the edge(s) in a graph

hrg: Create a hierarchical random graph from an igraph graph

hrg-methods: Hierarchical random graphs

hrg_tree: Create an igraph graph from a hierarchical random graph model

hub_score: Kleinberg's hub centrality scores.

identical_graphs: Decide if two graphs are identical

igraph-attribute-combination: How igraph functions handle attributes when the graph changes

igraph_demo: Run igraph demos, step by step

igraph-dollar: Getting and setting graph attributes, shortcut

igraph-es-attributes: Query or set attributes of the edges in an edge sequence

igraph-es-indexing: Indexing edge sequences

igraph-es-indexing2: Select edges and show their metadata

igraph-minus: Delete vertices or edges from a graph

igraph_options: Parameters for the igraph package

igraph_test: Run package tests

igraph_version: Query igraph's version string

igraph-vs-attributes: Query or set attributes of the vertices in a vertex sequence

igraph-vs-indexing: Indexing vertex sequences

igraph-vs-indexing2: Select vertices and show their metadata

incident: Incident edges of a vertex in a graph

incident_edges: Incident edges of multiple vertices in a graph

intersection: Intersection of two or more sets

intersection.igraph: Intersection of graphs

intersection.igraph.es: Intersection of edge sequences

intersection.igraph.vs: Intersection of vertex sequences

is_chordal: Chordality of a graph

is_dag: Directed acyclic graphs

is_degseq: Check if a degree sequence is valid for a multi-graph

is_directed: Check whether a graph is directed

is_graphical: Is a degree sequence graphical?

is_igraph: Is this object an igraph graph?

is_min_separator: Minumal vertex separators

is_named: Named graphs

isomorphic: Decide if two graphs are isomorphic

isomorphism_class: Isomorphism class of a graph

isomorphisms: Calculate all isomorphic mappings between the vertices of two...

is_separator: Vertex separators

is_weighted: Weighted graphs

ivs: Independent vertex sets

keeping_degseq: Graph rewiring while preserving the degree distribution

knn: Average nearest neighbor degree

laplacian_matrix: Graph Laplacian

layout_: Graph layouts

layout_as_bipartite: Simple two-row layout for bipartite graphs

layout_as_star: Generate coordinates to place the vertices of a graph in a...

layout_as_tree: The Reingold-Tilford graph layout algorithm

layout.deprecated: Deprecated layout functions

layout.fruchterman.reingold.grid: Grid Fruchterman-Reingold layout, this was removed from...

layout_in_circle: Graph layout with vertices on a circle.

layout_nicely: Choose an appropriate graph layout algorithm automatically

layout_on_grid: Simple grid layout

layout_on_sphere: Graph layout with vertices on the surface of a sphere

layout_randomly: Randomly place vertices on a plane or in 3d space

layout.spring: Spring layout, this was removed from igraph

layout.svd: SVD layout, this was removed from igraph

layout_with_dh: The Davidson-Harel layout algorithm

layout_with_drl: The DrL graph layout generator

layout_with_fr: The Fruchterman-Reingold layout algorithm

layout_with_gem: The GEM layout algorithm

layout_with_graphopt: The graphopt layout algorithm

layout_with_kk: The Kamada-Kawai layout algorithm

layout_with_lgl: Large Graph Layout

layout_with_mds: Graph layout by multidimensional scaling

layout_with_sugiyama: The Sugiyama graph layout generator

local_scan: Compute local scan statistics on graphs

make_: Make a new graph

make_bipartite_graph: Create a bipartite graph

make_chordal_ring: Create an extended chordal ring graph

make_clusters: Creates a communities object.

make_de_bruijn_graph: De Bruijn graphs

make_empty_graph: A graph with no edges

make_full_bipartite_graph: Create a full bipartite graph

make_full_citation_graph: Create a complete (full) citation graph

make_full_graph: Create a full graph

make_graph: Create an igraph graph from a list of edges, or a notable...

make_kautz_graph: Kautz graphs

make_lattice: Create a lattice graph

make_line_graph: Line graph of a graph

make_ring: Create a ring graph

make_star: Create a star graph, a tree with n vertices and n - 1 leaves

make_tree: Create tree graphs

matching: Graph matching

match_vertices: Match Graphs given a seeding of vertex correspondences

max_cardinality: Maximum cardinality search

max_flow: Maximum flow in a graph

merge_coords: Merging graph layouts

min_cut: Minimum cut in a graph

min_separators: Minimum size vertex separators

min_st_separators: Minimum size vertex separators

modularity.igraph: Modularity of a community structure of a graph

motifs: Graph motifs

mst: Minimum spanning tree

neighbors: Neighboring (adjacent) vertices in a graph

nexus: Query and download from the Nexus network repository

normalize: Normalize layout

norm_coords: Normalize coordinates for plotting graphs

page_rank: The Page Rank algorithm

path: Helper function to add or delete edges along a path

permute: Permute the vertices of a graph

pipe: Magrittr's pipes

plot.common: Drawing graphs

plot_dendrogram.communities: Community structure dendrogram plots

plot_dendrogram.igraphHRG: HRG dendrogram plot

plot.igraph: Plotting of graphs

plot.sir: Plotting the results on multiple SIR model runs

plus-.igraph: Add vertices, edges or another graph to a graph

power_centrality: Find Bonacich Power Centrality Scores of Network Positions

predict_edges: Predict edges based on a hierarchical random graph model

print.igraph: Print graphs to the terminal

print.igraph.es: Print an edge sequence to the screen

print.igraphHRG: Print a hierarchical random graph model to the screen

print.igraphHRGConsensus: Print a hierarchical random graph consensus tree to the...

print.igraph.vs: Show a vertex sequence on the screen

radius: Radius of a graph

random_walk: Random walk on a graph

read_graph: Reading foreign file formats

reciprocity: Reciprocity of graphs

rep.igraph: Replicate a graph multiple times

rev.igraph.es: Reverse the order in an edge sequence

rev.igraph.vs: Reverse the order in a vertex sequence

rewire: Rewiring edges of a graph

rglplot: 3D plotting of graphs with OpenGL

r_pal: The default R palette

running_mean: Running mean of a time series

sample_: Sample from a random graph model

sample_bipartite: Bipartite random graphs

sample_correlated_gnp: Generate a new random graph from a given graph by randomly...

sample_correlated_gnp_pair: Sample a pair of correlated G(n,p) random graphs

sample_degseq: Generate random graphs with a given degree sequence

sample_dirichlet: Sample from a Dirichlet distribution

sample_dot_product: Generate random graphs according to the random dot product...

sample_fitness: Random graphs from vertex fitness scores

sample_fitness_pl: Scale-free random graphs, from vertex fitness scores

sample_forestfire: Forest Fire Network Model

sample_gnm: Generate random graphs according to the G(n,m) Erdos-Renyi...

sample_gnp: Generate random graphs according to the G(n,p) Erdos-Renyi...

sample_grg: Geometric random graphs

sample_growing: Growing random graph generation

sample_hierarchical_sbm: Sample the hierarchical stochastic block model

sample_hrg: Sample from a hierarchical random graph model

sample_islands: A graph with subgraphs that are each a random graph.

sample_k_regular: Create a random regular graph

sample_last_cit: Random citation graphs

sample_motifs: Graph motifs

sample_pa: Generate scale-free graphs according to the Barabasi-Albert...

sample_pa_age: Generate an evolving random graph with preferential...

sample_pref: Trait-based random generation

sample_sbm: Sample stochastic block model

sample_seq: Sampling a random integer sequence

sample_smallworld: The Watts-Strogatz small-world model

sample_sphere_surface: Sample vectors uniformly from the surface of a sphere

sample_sphere_volume: Sample vectors uniformly from the volume of a sphere

sample_traits_callaway: Graph generation based on different vertex types

scan_stat: Scan statistics on a time series of graphs

scg: All-in-one Function for the SCG of Matrices and Graphs

scg_eps: Error of the spectral coarse graining (SCG) approximation

scg_group: SCG Problem Solver

scg-method: Spectral Coarse Graining

scg_semi_proj: Semi-Projectors

sequential_pal: Sequential palette

set_edge_attr: Set edge attributes

set_graph_attr: Set a graph attribute

set_vertex_attr: Set vertex attributes

shapes: Various vertex shapes when plotting igraph graphs

similarity: Similarity measures of two vertices

simplified: Constructor modifier to drop multiple and loop edges

simplify: Simple graphs

sir: SIR model on graphs

spectrum: Eigenvalues and eigenvectors of the adjacency matrix of a...

split_join_distance: Split-join distance of two community structures

srand: Deprecated function, used to set random seed of the C...

st_cuts: List all (s,t)-cuts of a graph

st_min_cuts: List all minimum (s,t)-cuts of a graph

stochastic_matrix: Stochastic matrix of a graph

strength: Strength or weighted vertex degree

subcomponent: In- or out- component of a vertex

subgraph: Subgraph of a graph

subgraph_centrality: Find subgraph centrality scores of network positions

subgraph_isomorphic: Decide if a graph is subgraph isomorphic to another one

subgraph_isomorphisms: All isomorphic mappings between a graph and subgraphs of...

sub-.igraph: Query and manipulate a graph as it were an adjacency matrix

sub-sub-.igraph: Query and manipulate a graph as it were an adjacency list

tail_of: Tails of the edge(s) in a graph

tkigraph: Experimental basic igraph GUI

tkplot: Interactive plotting of graphs

topo_sort: Topological sorting of vertices in a graph

transitivity: Transitivity of a graph

triad_census: Triad census, subgraphs with three vertices

unfold_tree: Convert a general graph into a forest

union: Union of two or more sets

union.igraph: Union of graphs

union.igraph.es: Union of edge sequences

union.igraph.vs: Union of vertex sequences

unique.igraph.es: Remove duplicate edges from an edge sequence

unique.igraph.vs: Remove duplicate vertices from a vertex sequence

upgrade_graph: Igraph data structure versions

V: Vertices of a graph

vertex: Helper function for adding and deleting vertices

vertex_attr: Query vertex attributes of a graph

vertex_attr_names: List names of vertex attributes

vertex_attr-set: Set one or more vertex attributes

vertex_connectivity: Vertex connectivity.

vertex.shape.pie: Using pie charts as vertices in graph plots

which_multiple: Find the multiple or loop edges in a graph

which_mutual: Find mutual edges in a directed graph

with_edge_: Constructor modifier to add edge attributes

with_graph_: Constructor modifier to add graph attributes

without_attr: Construtor modifier to remove all attributes from a graph

without_loops: Constructor modifier to drop loop edges

without_multiples: Constructor modifier to drop multiple edges

with_vertex_: Constructor modifier to add vertex attributes

write_graph: Writing the graph to a file in some format

Functions

\%<-\% Man page
\%>\% Man page
\%->\% Man page
\%--\% Man page
add_edges Man page
add.edges Man page
add_layout_ Man page
add_shape Man page
add.vertex.shape Man page
add_vertices Man page
add.vertices Man page
adhesion Man page
adjacent.triangles Man page
adjacent_vertices Man page
aging.ba.game Man page
aging.barabasi.game Man page
aging.prefatt.game Man page
algorithm Man page
all_shortest_paths Man page
all_simple_paths Man page
alpha_centrality Man page
alpha.centrality Man page
any_multiple Man page
are_adjacent Man page
are.connected Man page
arpack Man page
arpack_defaults Man page
arpack-options Man page
arpack.unpack.complex Man page
articulation_points Man page
articulation.points Man page
as_adj Man page
as_adjacency_matrix Man page
as_adj_edge_list Man page
as_adj_list Man page
as_bipartite Man page
as_data_frame Man page
as.dendrogram.communities Man page
as.directed Man page
as_edgelist Man page
as_graphnel Man page
as.hclust.communities Man page
as_ids Man page
as_ids.igraph.es Man page
as_ids.igraph.vs Man page
as.igraph Man page
as.igraph.igraphHRG Man page
as_incidence_matrix Man page
as_long_data_frame Man page
as_membership Man page
as_phylo Man page
asPhylo Man page
as_phylo.communities Man page
asPhylo.communities Man page
assortativity Man page
assortativity_degree Man page
assortativity.degree Man page
assortativity_nominal Man page
assortativity.nominal Man page
as_star Man page
as_tree Man page
as.undirected Man page
asymmetric.preference.game Man page
asym_pref Man page
atlas Man page
attribute.combination Man page
attributes Man page
authority_score Man page
authority.score Man page
autocurve.edges Man page
automorphisms Man page
average.path.length Man page
ba.game Man page
barabasi.game Man page
betweenness Man page
betweenness.estimate Man page
bfs Man page
bibcoupling Man page
biconnected_components Man page
biconnected.components Man page
bipartite Man page
bipartite_graph Man page
bipartite_mapping Man page
bipartite.mapping Man page
bipartite_projection Man page
bipartite.projection Man page
bipartite_projection_size Man page
bipartite.projection.size Man page
bipartite.random.game Man page
blockGraphs Man page
blocks Man page
bonpow Man page
\%c\% Man page
callaway.traits.game Man page
canonical_permutation Man page
canonical.permutation Man page
categorical_pal Man page
centralization Man page
centralization.betweenness Man page
centralization.betweenness.tmax Man page
centralization.closeness Man page
centralization.closeness.tmax Man page
centralization.degree Man page
centralization.degree.tmax Man page
centralization.evcent Man page
centralization.evcent.tmax Man page
centralize Man page
centralize.scores Man page
centr_betw Man page
centr_betw_tmax Man page
centr_clo Man page
centr_clo_tmax Man page
centr_degree Man page
centr_degree_tmax Man page
centr_eigen Man page
centr_eigen_tmax Man page
chordal_ring Man page
c.igraph.es Man page
c.igraph.vs Man page
cit_cit_types Man page
cited.type.game Man page
citing.cited.type.game Man page
cit_types Man page
clique_num Man page
clique.number Man page
cliques Man page
closeness Man page
closeness.estimate Man page
cluster.distribution Man page
cluster_edge_betweenness Man page
cluster_fast_greedy Man page
cluster_infomap Man page
cluster_label_prop Man page
cluster_leading_eigen Man page
cluster_louvain Man page
cluster_optimal Man page
clusters Man page
cluster_spinglass Man page
cluster_walktrap Man page
cocitation Man page
code_len Man page
code.length Man page
cohesion Man page
cohesion.cohesiveBlocks Man page
cohesion.igraph Man page
cohesive_blocks Man page
cohesive.blocks Man page
cohesiveBlocks Man page
communities Man page
compare Man page
compare.communities Man page
compare.membership Man page
complementer Man page
component_distribution Man page
components Man page
component_wise Man page
compose Man page
connect Man page
connect.neighborhood Man page
consensus_tree Man page
console Man page
constraint Man page
contract Man page
contract.vertices Man page
convex_hull Man page
convex.hull Man page
coreness Man page
count_components Man page
count_isomorphisms Man page
count_max_cliques Man page
count_motifs Man page
count_multiple Man page
count.multiple Man page
count_subgraph_isomorphisms Man page
count_triangles Man page
create.communities Man page
crossing Man page
curve_multiple Man page
cutat Man page
cut_at Man page
de_bruijn_graph Man page
decompose Man page
decompose.graph Man page
degree Man page
degree_distribution Man page
degree.distribution Man page
degree.sequence.game Man page
degseq Man page
delete_edge_attr Man page
delete_edges Man page
delete.edges Man page
delete_graph_attr Man page
delete_vertex_attr Man page
delete_vertices Man page
delete.vertices Man page
dendPlot Man page
dfs Man page
diameter Man page
difference Man page
difference.igraph Man page
difference.igraph.es Man page
difference.igraph.vs Man page
dim_select Man page
directed_graph Man page
disjoint_union Man page
distances Man page
distance_table Man page
diverging_pal Man page
diversity Man page
DL Man page
dominator_tree Man page
dominator.tree Man page
dot_product Man page
drl_defaults Man page
\%du\% Man page
dyad_census Man page
dyad.census Man page
E Man page
E<- Man page
each_edge Man page
eccentricity Man page
ecount Man page
edge Man page
edge_attr Man page
edge_attr<- Man page
edge.attributes Man page
edge.attributes<- Man page
edge_attr_names Man page
edge_betweenness Man page
edge.betweenness Man page
edge.betweenness.community Man page
edge.betweenness.estimate Man page
edge_connectivity Man page
edge.connectivity Man page
edge_density Man page
edge_disjoint_paths Man page
edge.disjoint.paths Man page
edges Man page
ego Man page
ego_graph Man page
ego_size Man page
eigen_centrality Man page
embed_adjacency_matrix Man page
embed_laplacian_matrix Man page
empty_graph Man page
ends Man page
erdos.renyi.game Man page
establishment.game Man page
estimate_betweenness Man page
estimate_closeness Man page
estimate_edge_betweenness Man page
evcent Man page
export_pajek Man page
exportPajek Man page
farthest.nodes Man page
farthest_vertices Man page
fastgreedy.community Man page
fit_hrg Man page
fit_power_law Man page
forest.fire.game Man page
from_adjacency Man page
from_data_frame Man page
from_edgelist Man page
from_incidence_matrix Man page
from_literal Man page
full_bipartite_graph Man page
full_citation_graph Man page
full_graph Man page
gclust.app Man page
gclust.rsvt Man page
get.adjacency Man page
get.adjedgelist Man page
get.adjlist Man page
getAICc Man page
get.all.shortest.paths Man page
get.data.frame Man page
get_diameter Man page
get.diameter Man page
get.edge Man page
get.edge.attribute Man page
get.edge.ids Man page
get.edgelist Man page
get.edges Man page
get.graph.attribute Man page
getIgraphOpt Man page
get.incidence Man page
get.shortest.paths Man page
get.stochastic Man page
get.vertex.attribute Man page
girth Man page
GML Man page
gnm Man page
gnp Man page
gorder Man page
graph Man page
graph_ Man page
graph.adhesion Man page
graph.adjacency Man page
graph.adjlist Man page
graph.atlas Man page
graph_attr Man page
graph_attr<- Man page
graph.attributes Man page
graph.attributes<- Man page
graph_attr_names Man page
graph.automorphisms Man page
graph.bfs Man page
graph.bipartite Man page
graph.cohesion Man page
graph.complementer Man page
graph.compose Man page
graph.coreness Man page
graph.count.isomorphisms.vf2 Man page
graph.count.subisomorphisms.vf2 Man page
graph.data.frame Man page
graph.de.bruijn Man page
graph.density Man page
graph.dfs Man page
graph.difference Man page
graph.disjoint.union Man page
graph.diversity Man page
graph.edgelist Man page
graph.eigen Man page
graph.empty Man page
graph.extended.chordal.ring Man page
graph.famous Man page
graph.formula Man page
graph_from_adjacency_matrix Man page
graph_from_adj_list Man page
graph_from_atlas Man page
graph_from_data_frame Man page
graph_from_edgelist Man page
graph_from_graphdb Man page
graph_from_graphnel Man page
graph_from_incidence_matrix Man page
graph_from_isomorphism_class Man page
graph_from_lcf Man page
graph_from_literal Man page
graph.full Man page
graph.full.bipartite Man page
graph.full.citation Man page
graph.get.isomorphisms.vf2 Man page
graph.get.subisomorphisms.vf2 Man page
graph.graphdb Man page
graph.incidence Man page
graph.intersection Man page
graph.isoclass Man page
graph.isoclass.subgraph Man page
graph.isocreate Man page
graph.isomorphic Man page
graph.isomorphic.34 Man page
graph.isomorphic.bliss Man page
graph.isomorphic.vf2 Man page
graph.kautz Man page
graph.knn Man page
graph.laplacian Man page
graph.lattice Man page
graph.lcf Man page
graphlet_basis Man page
graphlet_proj Man page
graphlets Man page
graphlets.candidate.basis Man page
graphlets.project Man page
graph.maxflow Man page
graph.mincut Man page
GraphML Man page
graph.motifs Man page
graph.motifs.est Man page
graph.motifs.no Man page
graph.neighborhood Man page
graph.ring Man page
graphs_from_cohesive_blocks Man page
graph.star Man page
graph.strength Man page
graph.subisomorphic.lad Man page
graph.subisomorphic.vf2 Man page
graph.tree Man page
graph.union Man page
graph_version Man page
grg Man page
grg.game Man page
groups Man page
groups.communities Man page
groups.default Man page
growing Man page
growing.random.game Man page
gsize Man page
has.multiple Man page
head_of Man page
hierarchical_sbm Man page
hierarchy Man page
hrg Man page
hrg.consensus Man page
hrg.create Man page
hrg.dendrogram Man page
hrg.fit Man page
hrg.game Man page
hrg-methods Man page
hrg.predict Man page
hrg_tree Man page
hub_score Man page
hub.score Man page
identical_graphs Man page
igraph Man page
-.igraph Man page
[.igraph Man page
[[.igraph Man page
$<-.igraph Man page
$.igraph Man page
*.igraph Man page
+.igraph Man page
igraph.arpack.default Man page
igraph-attribute-combination Man page
igraph.console Man page
igraphdemo Man page
igraph_demo Man page
igraph-dollar Man page
igraph.drl.coarsen Man page
igraph.drl.coarsest Man page
igraph.drl.default Man page
igraph.drl.final Man page
igraph.drl.refine Man page
igraph.eigen.default Man page
[<-.igraph.es Man page
[.igraph.es Man page
[[<-.igraph.es Man page
[[.igraph.es Man page
$<-.igraph.es Man page
$.igraph.es Man page
igraph-es-attributes Man page
igraph-es-indexing Man page
igraph-es-indexing2 Man page
igraph.from.graphNEL Man page
igraph-minus Man page
igraph_opt Man page
igraph_options Man page
igraph.options Man page
igraph-package Man page
igraph.plotting Man page
igraph.sample Man page
igraph.shape.noclip Man page
igraph.shape.noplot Man page
igraphtest Man page
igraph_test Man page
igraph.to.graphNEL Man page
igraph_version Man page
igraph.version Man page
igraph.vertex.shapes Man page
[<-.igraph.vs Man page
[.igraph.vs Man page
[[<-.igraph.vs Man page
[[.igraph.vs Man page
$<-.igraph.vs Man page
$.igraph.vs Man page
igraph-vs-attributes Man page
igraph-vs-indexing Man page
igraph-vs-indexing2 Man page
incident Man page
incident_edges Man page
in_circle Man page
independence.number Man page
independent.vertex.sets Man page
induced_subgraph Man page
induced.subgraph Man page
infomap.community Man page
interconnected.islands.game Man page
intersection Man page
intersection.igraph Man page
intersection.igraph.es Man page
intersection.igraph.vs Man page
is_bipartite Man page
is.bipartite Man page
is_chordal Man page
is.chordal Man page
is_connected Man page
is.connected Man page
is_dag Man page
is.dag Man page
is.degree.sequence Man page
is_degseq Man page
is_directed Man page
is.directed Man page
is_graphical Man page
is.graphical.degree.sequence Man page
is_hierarchical Man page
is.hierarchical Man page
is_igraph Man page
is.igraph Man page
is_isomorphic_to Man page
is.loop Man page
is_matching Man page
is.matching Man page
is.maximal.matching Man page
is_max_matching Man page
is.minimal.separator Man page
is_min_separator Man page
is.multiple Man page
is.mutual Man page
is_named Man page
is.named Man page
isomorphic Man page
isomorphism_class Man page
isomorphisms Man page
is_separator Man page
is.separator Man page
is_simple Man page
is.simple Man page
is_subgraph_isomorphic_to Man page
is_weighted Man page
is.weighted Man page
ivs Man page
ivs_size Man page
kautz_graph Man page
keeping_degseq Man page
knn Man page
k.regular.game Man page
label.propagation.community Man page
laplacian_matrix Man page
largest_cliques Man page
largest.cliques Man page
largest.independent.vertex.sets Man page
largest_ivs Man page
last_cit Man page
lastcit.game Man page
lattice Man page
layout Man page
layout_ Man page
layout_as_bipartite Man page
layout_as_star Man page
layout_as_tree Man page
layout.auto Man page
layout.bipartite Man page
layout.circle Man page
layout_components Man page
layout.davidson.harel Man page
layout.drl Man page
layout.fruchterman.reingold Man page
layout.fruchterman.reingold.grid Man page
layout.gem Man page
layout.graphopt Man page
layout.grid Man page
layout.grid.3d Man page
layout_in_circle Man page
layout.kamada.kawai Man page
layout.lgl Man page
layout.mds Man page
layout.merge Man page
layout_nicely Man page
layout.norm Man page
layout_on_grid Man page
layout_on_sphere Man page
layout.random Man page
layout_randomly Man page
layout.reingold.tilford Man page
layout.sphere Man page
layout.spring Man page
layout.star Man page
layout.sugiyama Man page
layout.svd Man page
layout_with_dh Man page
layout_with_drl Man page
layout_with_fr Man page
layout_with_gem Man page
layout_with_graphopt Man page
layout_with_kk Man page
layout_with_lgl Man page
layout_with_mds Man page
layout_with_sugiyama Man page
leading.eigenvector.community Man page
length.cohesiveBlocks Man page
length.communities Man page
LGL Man page
line_graph Man page
line.graph Man page
list.edge.attributes Man page
list.graph.attributes Man page
list.vertex.attributes Man page
local_scan Man page
\%m\% Man page
make_ Man page
make_bipartite_graph Man page
make_chordal_ring Man page
make_clusters Man page
make_de_bruijn_graph Man page
make_directed_graph Man page
make_ego_graph Man page
make_empty_graph Man page
make_full_bipartite_graph Man page
make_full_citation_graph Man page
make_full_graph Man page
make_graph Man page
make_kautz_graph Man page
make_lattice Man page
make_line_graph Man page
make_ring Man page
make_star Man page
make_tree Man page
make_undirected_graph Man page
match_vertices Man page
max_bipartite_match Man page
max_cardinality Man page
max_cliques Man page
maxcohesion Man page
max_cohesion Man page
max_flow Man page
maximal.cliques Man page
maximal.cliques.count Man page
maximal.independent.vertex.sets Man page
maximal_ivs Man page
maximum.bipartite.matching Man page
maximum.cardinality.search Man page
mean_distance Man page
median.sir Man page
membership Man page
merge_coords Man page
merges Man page
min_cut Man page
minimal.st.separators Man page
minimum.size.separators Man page
minimum.spanning.tree Man page
min_separators Man page
min_st_separators Man page
mod.matrix Man page
modularity Man page
modularity.communities Man page
modularity.igraph Man page
modularity_matrix Man page
motifs Man page
mst Man page
multilevel.community Man page
neighborhood Man page
neighborhood.size Man page
neighbors Man page
nexus Man page
nexusDatasetInfo Man page
[.nexusDatasetInfoList Man page
nexus_get Man page
nexus.get Man page
nexus_info Man page
nexus.info Man page
nexus_list Man page
nexus.list Man page
nexus_search Man page
nexus.search Man page
nicely Man page
no.clusters Man page
normalize Man page
norm_coords Man page
on_grid Man page
on_sphere Man page
optimal.community Man page
pa Man page
pa_age Man page
page_rank Man page
page.rank Man page
page_rank_old Man page
page.rank.old Man page
Pajek Man page
parent Man page
path Man page
path.length.hist Man page
permute Man page
permute.vertices Man page
piecewise.layout Man page
plot.cohesiveBlocks Man page
plot.communities Man page
plot_dendrogram Man page
plot_dendrogram.communities Man page
plot_dendrogram.igraphHRG Man page
plot.graph Man page
plot_hierarchy Man page
plotHierarchy Man page
plot.igraph Man page
plot.sir Man page
power_centrality Man page
power.law.fit Man page
predict_edges Man page
pref Man page
preference.game Man page
print.cohesiveBlocks Man page
print.communities Man page
print.igraph Man page
print.igraph.es Man page
print.igraphHRG Man page
print.igraphHRGConsensus Man page
print.igraph_layout_modifier Man page
print.igraph_layout_spec Man page
print.igraph.vs Man page
print.nexusDatasetInfo Man page
print.nexusDatasetInfoList Man page
quantile.sir Man page
radius Man page
random.graph.game Man page
randomly Man page
random_walk Man page
read_graph Man page
read.graph Man page
reciprocity Man page
remove.edge.attribute Man page
remove.graph.attribute Man page
remove.vertex.attribute Man page
rep.igraph Man page
rev.igraph.es Man page
rev.igraph.vs Man page
rewire Man page
rglplot Man page
rglplot.igraph Man page
ring Man page
r_pal Man page
running_mean Man page
running.mean Man page
\%s\% Man page
sample_ Man page
sample_asym_pref Man page
sample_bipartite Man page
sample_cit_cit_types Man page
sample_cit_types Man page
sample_correlated_gnp Man page
sample_correlated_gnp_pair Man page
sample_degseq Man page
sample_dirichlet Man page
sample_dot_product Man page
sample_fitness Man page
sample_fitness_pl Man page
sample_forestfire Man page
sample_gnm Man page
sample_gnp Man page
sample_grg Man page
sample_growing Man page
sample_hierarchical_sbm Man page
sample_hrg Man page
sample_islands Man page
sample_k_regular Man page
sample_last_cit Man page
sample_motifs Man page
sample_pa Man page
sample_pa_age Man page
sample_pref Man page
sample_sbm Man page
sample_seq Man page
sample_smallworld Man page
sample_sphere_surface Man page
sample_sphere_volume Man page
sample_traits Man page
sample_traits_callaway Man page
sbm Man page
sbm.game Man page
scan_stat Man page
scg Man page
scg_eps Man page
scg_group Man page
scgGrouping Man page
scg-method Man page
scgNormEps Man page
scg_semi_proj Man page
scgSemiProjectors Man page
seeded.graph.match Man page
sequential_pal Man page
set_edge_attr Man page
set.edge.attribute Man page
set_graph_attr Man page
set.graph.attribute Man page
set_vertex_attr Man page
set.vertex.attribute Man page
shape_noclip Man page
shape_noplot Man page
shapes Man page
shortest_paths Man page
shortest.paths Man page
showtrace Man page
show_trace Man page
similarity Man page
similarity.dice Man page
similarity.invlogweighted Man page
similarity.jaccard Man page
simplified Man page
simplify Man page
sir Man page
sizes Man page
smallworld Man page
spectrum Man page
spinglass.community Man page
split_join_distance Man page
srand Man page
star Man page
static.fitness.game Man page
static.power.law.game Man page
st_cuts Man page
stCuts Man page
st_min_cuts Man page
stMincuts Man page
stochastic_matrix Man page
strength Man page
str.igraph Man page
subcomponent Man page
subgraph Man page
subgraph_centrality Man page
subgraph.centrality Man page
subgraph.edges Man page
subgraph_isomorphic Man page
subgraph_isomorphisms Man page
summary.cohesiveBlocks Man page
summary.igraph Man page
summary.nexusDatasetInfoList Man page
tail_of Man page
time_bins Man page
time_bins.sir Man page
tk_canvas Man page
tk_center Man page
tk_close Man page
tk_coords Man page
tk_fit Man page
tkigraph Man page
tk_off Man page
tkplot Man page
tkplot.canvas Man page
tkplot.center Man page
tkplot.close Man page
tkplot.export.postscript Man page
tkplot.fit.to.screen Man page
tkplot.getcoords Man page
tkplot.off Man page
tkplot.reshape Man page
tkplot.rotate Man page
tkplot.setcoords Man page
tk_postscript Man page
tk_reshape Man page
tk_rotate Man page
tk_set_coords Man page
topological.sort Man page
topo_sort Man page
traits Man page
traits_callaway Man page
transitivity Man page
tree Man page
triad_census Man page
triad.census Man page
triangles Man page
\%u\% Man page
UCINET Man page
undirected_graph Man page
unfold_tree Man page
unfold.tree Man page
union Man page
union.igraph Man page
union.igraph.es Man page
union.igraph.vs Man page
unique.igraph.es Man page
unique.igraph.vs Man page
upgrade_graph Man page
V Man page
V<- Man page
vcount Man page
vertex Man page
vertex_attr Man page
vertex_attr<- Man page
vertex.attributes Man page
vertex.attributes<- Man page
vertex_attr_names Man page
vertex_connectivity Man page
vertex.connectivity Man page
vertex_disjoint_paths Man page
vertex.disjoint.paths Man page
vertex.shape.pie Man page
vertex.shapes Man page
vertices Man page
walktrap.community Man page
watts.strogatz.game Man page
which_loop Man page
which_multiple Man page
which_mutual Man page
with_dh Man page
with_drl Man page
with_edge_ Man page
with_fr Man page
with_gem Man page
with_graph_ Man page
with_graphopt Man page
with_kk Man page
with_lgl Man page
with_mds Man page
without_attr Man page
without_loops Man page
without_multiples Man page
with_sugiyama Man page
with_vertex_ Man page
write_graph Man page
write.graph Man page

Files

igraph
igraph/inst
igraph/inst/my_html_library.tcl
igraph/inst/html_library.tcl
igraph/inst/CITATION
igraph/inst/tests
igraph/inst/tests/test_graph.density.R
igraph/inst/tests/test-old-data-type.R
igraph/inst/tests/test_alpha.centrality.R
igraph/inst/tests/test_correlated.R
igraph/inst/tests/test_dominator.tree.R
igraph/inst/tests/test_girth.R
igraph/inst/tests/test_edge.connectivity.R
igraph/inst/tests/test_get.shortest.paths.R
igraph/inst/tests/test_fartherst.nodes.R
igraph/inst/tests/test_callbacks.R
igraph/inst/tests/test_are.connected.R
igraph/inst/tests/test_articulation.points.R
igraph/inst/tests/test_operators.R
igraph/inst/tests/test_communities.R
igraph/inst/tests/test_operators4.R
igraph/inst/tests/test_bug-1073800-clique.R
igraph/inst/tests/test_indexing3.R
igraph/inst/tests/test_attributes.R
igraph/inst/tests/test_sdf.R
igraph/inst/tests/test_forestfire.R
igraph/inst/tests/test_neighborhood.R
igraph/inst/tests/test_decompose.graph.R
igraph/inst/tests/test_layout.mds.R
igraph/inst/tests/test_arpack.R
igraph/inst/tests/test_igraph.options.R
igraph/inst/tests/dyad.census.R
igraph/inst/tests/test_edge.betweenness.community.R
igraph/inst/tests/test_layout.fr.R
igraph/inst/tests/test_bonpow.R
igraph/inst/tests/test_graphlets.R
igraph/inst/tests/test_graph.subisomorphic.vf2.R
igraph/inst/tests/test-vs-es.R
igraph/inst/tests/test-vs-es-printing.R
igraph/inst/tests/test-weakref.R
igraph/inst/tests/test_largest.cliques.R
igraph/inst/tests/test_average.path.length.R
igraph/inst/tests/test_sample.R
igraph/inst/tests/test_is.bipartite.R
igraph/inst/tests/test_iterators.R
igraph/inst/tests/test_graph.atlas.R
igraph/inst/tests/test_bug-1019624.R
igraph/inst/tests/test_graph.data.frame.R
igraph/inst/tests/test_minimal.st.separators.R
igraph/inst/tests/test_evcent.R
igraph/inst/tests/test_delete.vertices.R
igraph/inst/tests/test_dot.product.game.R
igraph/inst/tests/test_optimal.community.R
igraph/inst/tests/test_assortativity.R
igraph/inst/tests/test-random_walk.R
igraph/inst/tests/test_graph.de.bruijn.R
igraph/inst/tests/test_neighbors.R
igraph/inst/tests/test_authority.score.R
igraph/inst/tests/test_edgenames.R
igraph/inst/tests/test-make_graph.R
igraph/inst/tests/test_bug-1073705-indexing.R
igraph/inst/tests/test_pajek.R
igraph/inst/tests/test_independent.vertex.sets.R
igraph/inst/tests/test_dimSelect.R
igraph/inst/tests/test-isomorphism.R
igraph/inst/tests/test_bug-1033045.R
igraph/inst/tests/test_graph.maxflow.R
igraph/inst/tests/test_multilevel.community.R
igraph/inst/tests/test_adjacency.spectral.embedding.R
igraph/inst/tests/test_operators3.R
igraph/inst/tests/test_scg.R
igraph/inst/tests/test_as.directed.R
igraph/inst/tests/test_layout.gem.R
igraph/inst/tests/test_laplacian.spectral.embedding.R
igraph/inst/tests/test_closeness.R
igraph/inst/tests/test_walktrap.community.R
igraph/inst/tests/test_hsbm.R
igraph/inst/tests/test-version.R
igraph/inst/tests/test_graphNEL.R
igraph/inst/tests/test_label.propagation.community.R
igraph/inst/tests/test_fastgreedy.community.R
igraph/inst/tests/test-vs-es-quirks.R
igraph/inst/tests/test_graph.adhesion.R
igraph/inst/tests/test_graph.formula.R
igraph/inst/tests/test-new-layout-api.R
igraph/inst/tests/test_minimum.size.separators.R
igraph/inst/tests/test_graph.isoclass.R
igraph/inst/tests/test_indexing.R
igraph/inst/tests/test_triangles.R
igraph/inst/tests/test_delete.edges.R
igraph/inst/tests/test_ba.game.R
igraph/inst/tests/test_motifs.R
igraph/inst/tests/test_graph.knn.R
igraph/inst/tests/test-notable.R
igraph/inst/tests/test_constraint.R
igraph/inst/tests/test_degree.R
igraph/inst/tests/test_graph.complementer.R
igraph/inst/tests/test_clusters.R
igraph/inst/tests/test_graph.subisomorphic.lad.R
igraph/inst/tests/test_graph.adjacency.R
igraph/inst/tests/test_betweenness.R
igraph/inst/tests/test_as.undirected.R
igraph/inst/tests/test-index-es.R
igraph/inst/tests/test_bipartite.random.game.R
igraph/inst/tests/test_count.multiple.R
igraph/inst/tests/test-make.R
igraph/inst/tests/test_dyad.census.R
igraph/inst/tests/test_modularity_matrix.R
igraph/inst/tests/test_graph.bipartite.R
igraph/inst/tests/test-constructor-modifiers.R
igraph/inst/tests/test_edge.betweenness.R
igraph/inst/tests/test_graph.mincut.R
igraph/inst/tests/celegansneural.gml.gz
igraph/inst/tests/football.gml.gz
igraph/inst/tests/test_is.chordal.R
igraph/inst/tests/test_watts.strogatz.game.R
igraph/inst/tests/test_transitivity.R
igraph/inst/tests/test-versions.R
igraph/inst/tests/test_graph.edgelist.R
igraph/inst/tests/test_sir.R
igraph/inst/tests/test_get.adjacency.R
igraph/inst/tests/test_graph.kautz.R
igraph/inst/tests/test_cliques.R
igraph/inst/tests/test_indexing2.R
igraph/inst/tests/test_graph.compose.R
igraph/inst/tests/test_sgm.R
igraph/inst/tests/test_graph.bfs.R
igraph/inst/tests/test_scan.R
igraph/inst/tests/test_get.adjlist.R
igraph/inst/tests/test_bug-1032819.R
igraph/inst/tests/test_diameter.R
igraph/inst/tests/test_biconnected.components.R
igraph/inst/tests/test_contract.vertices.R
igraph/inst/tests/test_graph.coreness.R
igraph/inst/tests/test_print.R
igraph/inst/tests/test_sbm.game.R
igraph/inst/tests/test_get.edgelist.R
igraph/inst/tests/test_psumtree.R
igraph/inst/tests/test_maximal_cliques.R
igraph/inst/tests/test-vs-indexing-lapply.R
igraph/inst/tests/test_add.vertices.R
igraph/inst/tests/power.gml.gz
igraph/inst/tests/test_graph.adjlist.R
igraph/inst/tests/test_leading.eigenvector.community.R
igraph/inst/tests/test_hrg.R
igraph/inst/tests/test-vs-operators.R
igraph/inst/tests/test_layout.kk.R
igraph/inst/tests/test_graph.eigen.R
igraph/inst/tests/test_bipartite.projection.R
igraph/inst/tests/test_get.edge.R
igraph/inst/tests/test_degree.sequence.game.R
igraph/inst/tests/test_get.diameter.R
igraph/inst/tests/test_get.incidence.R
igraph/inst/tests/test_layout.merge.R
igraph/inst/tests/test_add.edges.R
igraph/inst/tests/test_sphere.R
igraph/inst/tests/test_all.st.cuts.R
igraph/inst/tests/test_unfold.tree.R
igraph/inst/tests/test_canonical.permutation.R
igraph/inst/tests/test_largest.independent.vertex.sets.R
igraph/inst/tests/test_get.all.shortest.paths.R
igraph/inst/AUTHORS
igraph/inst/html_library.license.terms
igraph/inst/igraph2.gif
igraph/inst/NEWS.md
igraph/inst/README.md
igraph/inst/tkigraph_help
igraph/inst/tkigraph_help/index.html
igraph/inst/tkigraph_help/communities.html
igraph/inst/tkigraph_help/style.css
igraph/inst/tkigraph_help/tkigraph-main.gif
igraph/inst/benchmarks
igraph/inst/benchmarks/time_dirSelect.R
igraph/inst/benchmarks/time_fr_layout.R
igraph/inst/benchmarks/correlated.R
igraph/inst/benchmarks/time_sir.R
igraph/inst/benchmarks/local.scan.R
igraph/inst/benchmarks/time_kk_layout.R
igraph/inst/benchmarks/time_sgm.R
igraph/inst/benchmarks/time_print.R
igraph/inst/benchmarks/time_call.R
igraph/inst/igraph.gif
igraph/configure.ac
igraph/src
igraph/src/NetDataTypes.h
igraph/src/bignum.h
igraph/src/walktrap_communities.cpp
igraph/src/bliss_partition.hh
igraph/src/bliss_defs.hh
igraph/src/infomap_FlowGraph.cc
igraph/src/DensityGrid_3d.h
igraph/src/cliques.c
igraph/src/matrix.c
igraph/src/bigint.c
igraph/src/gengraph_vertex_cover.h
igraph/src/gengraph_header.h
igraph/src/foreign-pajek-lexer.c
igraph/src/foreign-ncol-lexer.c
igraph/src/foreign-dl-parser.c
igraph/src/igraph_math.h
igraph/src/distances.c
igraph/src/glpk_support.c
igraph/src/igraph_blas_internal.h
igraph/src/hrg_splittree_eq.h
igraph/src/dsgets.f
igraph/src/drl_graph_3d.h
igraph/src/walktrap_graph.cpp
igraph/src/walktrap.cpp
igraph/src/gengraph_powerlaw.cpp
igraph/src/gengraph_degree_sequence.h
igraph/src/layout_gem.c
igraph/src/conversion.c
igraph/src/lazyeval.c
igraph/src/scg.c
igraph/src/foreign-pajek-lexer.l
igraph/src/separators.c
igraph/src/progress.c
igraph/src/lad.c
igraph/src/layout.c
igraph/src/foreign-lgl-parser.h
igraph/src/NetRoutines.cpp
igraph/src/other.c
igraph/src/attributes.c
igraph/src/dstatn.f
igraph/src/heap.pmt
igraph/src/foreign-pajek-header.h
igraph/src/igraph_version.h
igraph/src/igraph_lapack_internal.h
igraph/src/walktrap_communities.h
igraph/src/foreign-graphml.c
igraph/src/clustertool.cpp
igraph/src/foreign-gml-lexer.l
igraph/src/infomap_Greedy.h
igraph/src/foreign-gml-header.h
igraph/src/prpack.cpp
igraph/src/dnconv.f
igraph/src/igraph_hashtable.c
igraph/src/community.c
igraph/src/config.h.in
igraph/src/dsaup2.f
igraph/src/vector_ptr.c
igraph/src/bliss_utils.cc
igraph/src/array.pmt
igraph/src/infomap_FlowGraph.h
igraph/src/dnaupd.f
igraph/src/heap.c
igraph/src/igraph_arpack_internal.h
igraph/src/components.c
igraph/src/sugiyama.c
igraph/src/drl_layout.cpp
igraph/src/random_walk.c
igraph/src/foreign.c
igraph/src/layout_fr.c
igraph/src/types.c
igraph/src/rinterface_extra.c
igraph/src/vector.pmt
igraph/src/foreign-pajek-parser.h
igraph/src/mixing.c
igraph/src/bfgs.c
igraph/src/bliss_kqueue.hh
igraph/src/vector.c
igraph/src/rinterface.h
igraph/src/pstdint.h
igraph/src/drl_graph_3d.cpp
igraph/src/foreign-pajek-parser.y
igraph/src/igraph_threading.h
igraph/src/dsortc.f
igraph/src/atlas.c
igraph/src/forestfire.c
igraph/src/dotproduct.c
igraph/src/igraph_strvector.c
igraph/src/complex.c
igraph/src/dqueue.c
igraph/src/igraph_heap.c
igraph/src/igraph_set.c
igraph/src/DensityGrid.cpp
igraph/src/topology.c
igraph/src/foreign-gml-lexer.c
igraph/src/foreign-lgl-lexer.c
igraph/src/igraph_gml_tree.h
igraph/src/scg_approximate_methods.c
igraph/src/decomposition.c
igraph/src/igraph_hacks_internal.h
igraph/src/igraph_interrupt_internal.h
igraph/src/random.c
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igraph/src/cs/cs_ereach.c
igraph/src/cs/cs_multiply.c
igraph/src/cs/cs_leaf.c
igraph/src/cs/cs_ltsolve.c
igraph/src/cs/cs_updown.c
igraph/src/cs/cs_util.c
igraph/src/cs/cs_cumsum.c
igraph/src/cs/cs_fkeep.c
igraph/src/cs/cs_chol.c
igraph/src/cs/cs_randperm.c
igraph/src/cs/cs_counts.c
igraph/src/cs/cs_cholsol.c
igraph/src/cs/cs_norm.c
igraph/src/cs/cs_print.c
igraph/src/cs/cs_etree.c
igraph/src/cs/cs_entry.c
igraph/src/cs/cs_load.c
igraph/src/cs/cs_droptol.c
igraph/src/cs/cs_qrsol.c
igraph/src/cs/cs_add.c
igraph/src/cs/cs_usolve.c
igraph/src/cs/cs_malloc.c
igraph/src/cs/cs_lu.c
igraph/src/cs/cs_maxtrans.c
igraph/src/cs/cs_symperm.c
igraph/src/cs/cs_lusol.c
igraph/src/cs/cs_schol.c
igraph/src/cs/cs_transpose.c
igraph/src/cs/cs.h
igraph/src/cs/cs_spsolve.c
igraph/src/cs/cs_happly.c
igraph/src/cs/cs_compress.c
igraph/src/cs/cs_reach.c
igraph/src/cs/cs_pvec.c
igraph/src/cs/cs_dfs.c
igraph/src/cs/cs_dupl.c
igraph/src/cs/UFconfig.h
igraph/src/cs/cs_tdfs.c
igraph/src/cs/cs_amd.c
igraph/src/cs/cs_scatter.c
igraph/src/cs/cs_pinv.c
igraph/src/cs/cs_lsolve.c
igraph/src/cs/cs_utsolve.c
igraph/src/cs/cs_dmperm.c
igraph/src/cs/cs_dropzeros.c
igraph/src/cs/cs_scc.c
igraph/src/cs/cs_gaxpy.c
igraph/src/cs/cs_sqr.c
igraph/src/drl_graph.h
igraph/src/foreign-ncol-parser.y
igraph/src/dmout.f
igraph/src/foreign-dl-parser.y
igraph/src/walktrap_heap.h
igraph/src/sparsemat.c
igraph/src/dseigt.f
igraph/src/dneigh.f
igraph/src/igraph_f2c.h
igraph/src/foreign-lgl-parser.c
igraph/src/fortran_intrinsics.c
igraph/src/bigint.h
igraph/src/version.c
igraph/src/igraph_hrg.cc
igraph/src/include
igraph/src/include/igraph_random.h
igraph/src/include/igraph_heap.h
igraph/src/include/igraph_array.h
igraph/src/include/igraph_lsap.h
igraph/src/include/igraph_vector_type.h
igraph/src/include/igraph_matrix.h
igraph/src/include/igraph_psumtree.h
igraph/src/include/igraph_embedding.h
igraph/src/include/igraph_structural.h
igraph/src/include/igraph_datatype.h
igraph/src/include/igraph_pmt.h
igraph/src/include/igraph_threading.h.in
igraph/src/include/igraph_transitivity.h
igraph/src/include/igraph_paths.h
igraph/src/include/igraph_bipartite.h
igraph/src/include/igraph_spmatrix.h
igraph/src/include/igraph_matrix_pmt.h
igraph/src/include/igraph_attributes.h
igraph/src/include/igraph_cocitation.h
igraph/src/include/igraph_version.h.in
igraph/src/include/igraph_arpack.h
igraph/src/include/igraph_scg.h
igraph/src/include/igraph_conversion.h
igraph/src/include/igraph_graphlets.h
igraph/src/include/igraph_eigen.h
igraph/src/include/igraph_vector_pmt.h
igraph/src/include/igraph_epidemics.h
igraph/src/include/igraph_scan.h
igraph/src/include/igraph_centrality.h
igraph/src/include/igraph_pmt_off.h
igraph/src/include/igraph_iterators.h
igraph/src/include/igraph_error.h
igraph/src/include/igraph_components.h
igraph/src/include/igraph_hrg.h
igraph/src/include/igraph_interface.h
igraph/src/include/igraph_motifs.h
igraph/src/include/igraph_flow.h
igraph/src/include/igraph_vector.h
igraph/src/include/igraph_mixing.h
igraph/src/include/igraph_games.h
igraph/src/include/igraph_complex.h
igraph/src/include/igraph.h
igraph/src/include/igraph_stack.h
igraph/src/include/igraph_nongraph.h
igraph/src/include/igraph_foreign.h
igraph/src/include/igraph_dqueue_pmt.h
igraph/src/include/igraph_qsort.h
igraph/src/include/igraph_stack_pmt.h
igraph/src/include/igraph_topology.h
igraph/src/include/igraph_visitor.h
igraph/src/include/igraph_neighborhood.h
igraph/src/include/igraph_strvector.h
igraph/src/include/igraph_community.h
igraph/src/include/igraph_matching.h
igraph/src/include/igraph_separators.h
igraph/src/include/igraph_microscopic_update.h
igraph/src/include/igraph_constructors.h
igraph/src/include/igraph_layout.h
igraph/src/include/igraph_lapack.h
igraph/src/include/igraph_array_pmt.h
igraph/src/include/igraph_blas.h
igraph/src/include/igraph_types.h
igraph/src/include/igraph_cliques.h
igraph/src/include/igraph_dqueue.h
igraph/src/include/igraph_memory.h
igraph/src/include/igraph_adjlist.h
igraph/src/include/igraph_vector_ptr.h
igraph/src/include/igraph_progress.h
igraph/src/include/igraph_interrupt.h
igraph/src/include/igraph_statusbar.h
igraph/src/include/igraph_sparsemat.h
igraph/src/include/igraph_operators.h
igraph/src/include/igraph_heap_pmt.h
igraph/src/include/igraph_cohesive_blocks.h
igraph/src/include/igraph_constants.h
igraph/src/dvout.f
igraph/src/igraph_types_internal.h
igraph/NAMESPACE
igraph/demo
igraph/demo/hrg.R
igraph/demo/centrality.R
igraph/demo/cohesive.R
igraph/demo/00Index
igraph/demo/community.R
igraph/demo/smallworld.R
igraph/demo/crashR.R
igraph/R
igraph/R/zzz-deprecate.R igraph/R/scan.R igraph/R/decomposition.R igraph/R/auto.R igraph/R/palette.R igraph/R/games.R igraph/R/utils.R igraph/R/printr.R igraph/R/attributes.R igraph/R/operators.R igraph/R/structural.properties.R igraph/R/scg.R igraph/R/minimum.spanning.tree.R igraph/R/structure.info.R igraph/R/lazyeval.R igraph/R/epi.R igraph/R/hrg.R
igraph/R/auto.R.in
igraph/R/versions.R igraph/R/simple.R igraph/R/plot.R igraph/R/triangles.R igraph/R/sir.R igraph/R/indexing.R igraph/R/topology.R igraph/R/foreign.R igraph/R/layout.R igraph/R/cliques.R igraph/R/par.R igraph/R/assortativity.R igraph/R/rewire.R igraph/R/plot.shapes.R igraph/R/weakref.R igraph/R/sgm.R igraph/R/igraph-package.R igraph/R/embedding.R igraph/R/cohesive.blocks.R igraph/R/components.R igraph/R/centrality.R igraph/R/fit.R igraph/R/make.R igraph/R/basic.R igraph/R/test.R igraph/R/socnet.R igraph/R/data_frame.R igraph/R/print.R igraph/R/conversion.R igraph/R/paths.R igraph/R/community.R igraph/R/demo.R igraph/R/sparsedf.R igraph/R/layout_drl.R igraph/R/mgclust.R igraph/R/package.R igraph/R/interface.R igraph/R/console.R igraph/R/uuid.R igraph/R/plot.common.R igraph/R/similarity.R igraph/R/bipartite.R igraph/R/motifs.R igraph/R/other.R igraph/R/pp.R igraph/R/centralization.R igraph/R/flow.R igraph/R/iterators.R igraph/R/cocitation.R igraph/R/incidence.R igraph/R/random_walk.R igraph/R/glet.R igraph/R/nexus.R igraph/R/tkplot.R igraph/R/adjacency.R igraph/R/degseq.R
igraph/MD5
igraph/DESCRIPTION
igraph/configure
igraph/man
igraph/man/make_full_citation_graph.Rd igraph/man/subgraph_centrality.Rd igraph/man/hrg_tree.Rd igraph/man/graph_.Rd igraph/man/convex_hull.Rd igraph/man/motifs.Rd igraph/man/add_vertices.Rd igraph/man/without_loops.Rd igraph/man/sample_pref.Rd igraph/man/is_weighted.Rd igraph/man/layout_with_mds.Rd igraph/man/add_edges.Rd igraph/man/igraph_options.Rd igraph/man/read_graph.Rd igraph/man/min_cut.Rd igraph/man/pipe.Rd igraph/man/make_clusters.Rd igraph/man/is_degseq.Rd igraph/man/compose.Rd igraph/man/incident.Rd igraph/man/sample_k_regular.Rd igraph/man/layout_with_gem.Rd igraph/man/distances.Rd igraph/man/rev.igraph.vs.Rd igraph/man/canonical_permutation.Rd igraph/man/layout_with_fr.Rd igraph/man/incident_edges.Rd igraph/man/cluster_leading_eigen.Rd igraph/man/get.edge.ids.Rd igraph/man/sample_hierarchical_sbm.Rd igraph/man/graphlet_basis.Rd igraph/man/path.Rd igraph/man/vertex.shape.pie.Rd igraph/man/sample_.Rd igraph/man/disjoint_union.Rd igraph/man/layout_on_sphere.Rd igraph/man/sample_sphere_surface.Rd igraph/man/layout_as_bipartite.Rd igraph/man/sample_dirichlet.Rd igraph/man/delete_graph_attr.Rd igraph/man/make_chordal_ring.Rd igraph/man/erdos.renyi.game.Rd igraph/man/scg_group.Rd igraph/man/layout_with_kk.Rd igraph/man/bfs.Rd igraph/man/intersection.igraph.Rd igraph/man/laplacian_matrix.Rd igraph/man/embed_laplacian_matrix.Rd igraph/man/sample_grg.Rd igraph/man/difference.igraph.Rd igraph/man/centr_eigen_tmax.Rd igraph/man/layout.fruchterman.reingold.grid.Rd igraph/man/knn.Rd igraph/man/add_layout_.Rd igraph/man/automorphisms.Rd igraph/man/sample_correlated_gnp.Rd igraph/man/layout_nicely.Rd igraph/man/edge_density.Rd igraph/man/intersection.igraph.vs.Rd igraph/man/cluster_infomap.Rd igraph/man/diversity.Rd igraph/man/unfold_tree.Rd igraph/man/union.igraph.Rd igraph/man/dominator_tree.Rd igraph/man/norm_coords.Rd igraph/man/fit_power_law.Rd igraph/man/rep.igraph.Rd igraph/man/as.igraph.Rd igraph/man/layout.svd.Rd igraph/man/shapes.Rd igraph/man/igraph-vs-indexing.Rd igraph/man/nexus.Rd igraph/man/are_adjacent.Rd igraph/man/edge_connectivity.Rd igraph/man/identical_graphs.Rd igraph/man/ivs.Rd igraph/man/sample_hrg.Rd igraph/man/set_vertex_attr.Rd igraph/man/embed_adjacency_matrix.Rd igraph/man/union.Rd igraph/man/as.directed.Rd igraph/man/hrg.Rd igraph/man/as_adjacency_matrix.Rd igraph/man/layout.deprecated.Rd igraph/man/E.Rd igraph/man/isomorphisms.Rd igraph/man/dim_select.Rd igraph/man/sequential_pal.Rd igraph/man/layout.spring.Rd igraph/man/dfs.Rd igraph/man/graph_from_data_frame.Rd igraph/man/sample_bipartite.Rd igraph/man/make_star.Rd igraph/man/similarity.Rd igraph/man/subgraph.Rd igraph/man/make_line_graph.Rd igraph/man/is_dag.Rd igraph/man/contract.Rd igraph/man/which_multiple.Rd igraph/man/layout_randomly.Rd igraph/man/difference.igraph.es.Rd igraph/man/count_subgraph_isomorphisms.Rd igraph/man/topo_sort.Rd igraph/man/with_graph_.Rd igraph/man/communities.Rd igraph/man/merge_coords.Rd igraph/man/with_edge_.Rd igraph/man/is_directed.Rd igraph/man/layout_with_drl.Rd igraph/man/make_de_bruijn_graph.Rd igraph/man/union.igraph.es.Rd igraph/man/authority_score.Rd igraph/man/layout_in_circle.Rd igraph/man/layout_with_lgl.Rd igraph/man/sample_growing.Rd igraph/man/getAICc.Rd igraph/man/scg-method.Rd igraph/man/cluster_label_prop.Rd igraph/man/constraint.Rd igraph/man/complementer.Rd igraph/man/assortativity.Rd igraph/man/sample_fitness_pl.Rd igraph/man/sample_islands.Rd igraph/man/transitivity.Rd igraph/man/srand.Rd igraph/man/arpack.Rd igraph/man/sample_gnp.Rd igraph/man/sample_fitness.Rd igraph/man/radius.Rd igraph/man/igraph_demo.Rd igraph/man/set_graph_attr.Rd igraph/man/predict_edges.Rd igraph/man/plot.common.Rd igraph/man/graph_from_graphdb.Rd igraph/man/subgraph_isomorphic.Rd igraph/man/igraph_test.Rd igraph/man/is_separator.Rd igraph/man/decompose.Rd igraph/man/closeness.Rd igraph/man/which_mutual.Rd igraph/man/gclust.app.Rd igraph/man/with_vertex_.Rd igraph/man/centr_degree.Rd igraph/man/component_wise.Rd igraph/man/components.Rd igraph/man/sir.Rd igraph/man/as_ids.Rd igraph/man/head_of.Rd igraph/man/scg_eps.Rd igraph/man/cocitation.Rd igraph/man/vertex_connectivity.Rd igraph/man/max_cardinality.Rd igraph/man/set_edge_attr.Rd igraph/man/centr_degree_tmax.Rd igraph/man/as_long_data_frame.Rd igraph/man/unique.igraph.es.Rd igraph/man/layout_with_dh.Rd igraph/man/without_multiples.Rd igraph/man/cliques.Rd igraph/man/is_named.Rd igraph/man/plot.igraph.Rd igraph/man/graph_from_incidence_matrix.Rd igraph/man/igraph-es-indexing2.Rd igraph/man/c.igraph.vs.Rd igraph/man/graph_from_lcf.Rd igraph/man/scan_stat.Rd igraph/man/isomorphism_class.Rd igraph/man/power_centrality.Rd igraph/man/reciprocity.Rd igraph/man/igraph_version.Rd igraph/man/sample_forestfire.Rd igraph/man/make_full_graph.Rd igraph/man/scg_semi_proj.Rd igraph/man/sample_degseq.Rd igraph/man/cluster_louvain.Rd igraph/man/max_flow.Rd igraph/man/sub-sub-.igraph.Rd igraph/man/graph_from_edgelist.Rd igraph/man/biconnected_components.Rd igraph/man/make_graph.Rd igraph/man/make_bipartite_graph.Rd igraph/man/hrg-methods.Rd igraph/man/random_walk.Rd igraph/man/igraph-es-attributes.Rd igraph/man/edge.Rd igraph/man/st_min_cuts.Rd igraph/man/layout_.Rd igraph/man/cohesive_blocks.Rd igraph/man/layout_with_sugiyama.Rd igraph/man/tail_of.Rd igraph/man/centr_eigen.Rd igraph/man/graph_from_literal.Rd igraph/man/make_ring.Rd igraph/man/sample_last_cit.Rd igraph/man/igraph-vs-indexing2.Rd igraph/man/coreness.Rd igraph/man/as_edgelist.Rd igraph/man/print.igraph.vs.Rd igraph/man/permute.Rd igraph/man/make_full_bipartite_graph.Rd igraph/man/print.igraph.es.Rd igraph/man/vertex_attr_names.Rd igraph/man/count_isomorphisms.Rd igraph/man/sample_correlated_gnp_pair.Rd igraph/man/matching.Rd igraph/man/union.igraph.vs.Rd igraph/man/keeping_degseq.Rd igraph/man/subcomponent.Rd igraph/man/make_lattice.Rd igraph/man/groups.Rd igraph/man/dyad_census.Rd igraph/man/graph_from_adjacency_matrix.Rd igraph/man/articulation_points.Rd igraph/man/igraph-vs-attributes.Rd igraph/man/running_mean.Rd igraph/man/print.igraphHRGConsensus.Rd igraph/man/compare.Rd igraph/man/centralize.Rd igraph/man/as_membership.Rd igraph/man/make_empty_graph.Rd igraph/man/consensus_tree.Rd igraph/man/upgrade_graph.Rd igraph/man/aaa-igraph-package.Rd igraph/man/sample_sphere_volume.Rd igraph/man/graph_from_graphnel.Rd igraph/man/sub-.igraph.Rd igraph/man/graph_attr.Rd igraph/man/page_rank.Rd igraph/man/centr_clo.Rd igraph/man/subgraph_isomorphisms.Rd igraph/man/sample_pa.Rd igraph/man/is_graphical.Rd igraph/man/count_triangles.Rd igraph/man/rewire.Rd igraph/man/plot_dendrogram.igraphHRG.Rd igraph/man/console.Rd igraph/man/sample_motifs.Rd igraph/man/layout_as_tree.Rd igraph/man/sample_smallworld.Rd igraph/man/is_min_separator.Rd igraph/man/bipartite_projection.Rd igraph/man/plot_dendrogram.communities.Rd igraph/man/without_attr.Rd igraph/man/make_.Rd igraph/man/diameter.Rd igraph/man/vertex_attr.Rd igraph/man/betweenness.Rd igraph/man/centr_betw_tmax.Rd igraph/man/local_scan.Rd igraph/man/igraph-attribute-combination.Rd igraph/man/eigen_centrality.Rd igraph/man/intersection.igraph.es.Rd igraph/man/match_vertices.Rd igraph/man/bipartite_mapping.Rd igraph/man/vertex.Rd igraph/man/is_igraph.Rd igraph/man/fit_hrg.Rd igraph/man/as_graphnel.Rd igraph/man/layout_as_star.Rd igraph/man/normalize.Rd igraph/man/count_motifs.Rd igraph/man/curve_multiple.Rd igraph/man/graph_attr_names.Rd igraph/man/delete_vertex_attr.Rd igraph/man/simplify.Rd igraph/man/centr_clo_tmax.Rd igraph/man/triad_census.Rd igraph/man/each_edge.Rd igraph/man/as_incidence_matrix.Rd igraph/man/centr_betw.Rd igraph/man/layout_on_grid.Rd igraph/man/all_simple_paths.Rd igraph/man/difference.igraph.vs.Rd igraph/man/graph_attr-set.Rd igraph/man/split_join_distance.Rd igraph/man/sample_dot_product.Rd igraph/man/stochastic_matrix.Rd igraph/man/print.igraphHRG.Rd igraph/man/unique.igraph.vs.Rd igraph/man/min_st_separators.Rd igraph/man/layout_with_graphopt.Rd igraph/man/mst.Rd igraph/man/alpha_centrality.Rd igraph/man/edge_attr_names.Rd igraph/man/ends.Rd igraph/man/intersection.Rd igraph/man/igraph-es-indexing.Rd igraph/man/gsize.Rd igraph/man/eccentricity.Rd igraph/man/diverging_pal.Rd igraph/man/st_cuts.Rd igraph/man/modularity.igraph.Rd igraph/man/igraph-dollar.Rd igraph/man/edge_attr.Rd igraph/man/rev.igraph.es.Rd igraph/man/scg.Rd igraph/man/categorical_pal.Rd igraph/man/spectrum.Rd igraph/man/sample_sbm.Rd igraph/man/delete_edges.Rd igraph/man/vertex_attr-set.Rd igraph/man/ego.Rd igraph/man/as_adj_list.Rd igraph/man/cluster_spinglass.Rd igraph/man/delete_vertices.Rd igraph/man/cluster_fast_greedy.Rd igraph/man/neighbors.Rd igraph/man/graph_from_atlas.Rd igraph/man/graph_from_adj_list.Rd igraph/man/tkplot.Rd igraph/man/delete_edge_attr.Rd igraph/man/rglplot.Rd igraph/man/write_graph.Rd igraph/man/c.igraph.es.Rd igraph/man/sample_traits_callaway.Rd igraph/man/difference.Rd igraph/man/degree.Rd igraph/man/is_chordal.Rd igraph/man/igraph-minus.Rd igraph/man/gorder.Rd igraph/man/adjacent_vertices.Rd igraph/man/sample_gnm.Rd igraph/man/print.igraph.Rd igraph/man/min_separators.Rd igraph/man/make_kautz_graph.Rd igraph/man/edge_attr-set.Rd igraph/man/graph_from_isomorphism_class.Rd igraph/man/gclust.rsvt.Rd igraph/man/graph_version.Rd igraph/man/cluster_walktrap.Rd igraph/man/simplified.Rd igraph/man/isomorphic.Rd igraph/man/strength.Rd igraph/man/plus-.igraph.Rd igraph/man/V.Rd igraph/man/cluster_edge_betweenness.Rd igraph/man/girth.Rd igraph/man/sample_seq.Rd igraph/man/plot.sir.Rd igraph/man/cluster_optimal.Rd igraph/man/make_tree.Rd igraph/man/hub_score.Rd igraph/man/sample_pa_age.Rd igraph/man/r_pal.Rd igraph/man/tkigraph.Rd
igraph/configure.win

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