assortativity  R Documentation 
The assortativity coefficient is positive is similar vertices (based on some external property) tend to connect to each, and negative otherwise.
assortativity(graph, types1, types2 = NULL, directed = TRUE)
assortativity_nominal(graph, types, directed = TRUE)
assortativity_degree(graph, directed = TRUE)
graph 
The input graph, it can be directed or undirected. 
types1 
The vertex values, these can be arbitrary numeric values. 
types2 
A second value vector to be using for the incoming edges when
calculating assortativity for a directed graph. Supply 
directed 
Logical scalar, whether to consider edge directions for
directed graphs. This argument is ignored for undirected graphs. Supply

types 
Vector giving the vertex types. They as assumed to be integer
numbers, starting with one. Noninteger values are converted to integers
with 
The assortativity coefficient measures the level of homophyly of the graph, based on some vertex labeling or values assigned to vertices. If the coefficient is high, that means that connected vertices tend to have the same labels or similar assigned values.
M.E.J. Newman defined two kinds of assortativity coefficients, the first one
is for categorical labels of vertices. assortativity_nominal()
calculates this measure. It is defines as
r=\frac{\sum_i e_{ii}\sum_i a_i b_i}{1\sum_i a_i b_i}
where e_{ij}
is the fraction of edges connecting vertices of
type i
and j
, a_i=\sum_j e_{ij}
and
b_j=\sum_i e_{ij}
.
The second assortativity variant is based on values assigned to the
vertices. assortativity()
calculates this measure. It is defined as
r=\frac1{\sigma_q^2}\sum_{jk} jk(e_{jk}q_j q_k)
for undirected graphs (q_i=\sum_j e_{ij}
) and as
r=\frac1{\sigma_o\sigma_i}\sum_{jk}jk(e_{jk}q_j^o q_k^i)
for directed ones. Here q_i^o=\sum_j e_{ij}
,
q_i^i=\sum_j e_{ji}
, moreover,
\sigma_q
, sigma_o
and
sigma_i
are the standard deviations of q
,
q^o
and q^i
, respectively.
The reason of the difference is that in directed networks the relationship is not symmetric, so it is possible to assign different values to the outgoing and the incoming end of the edges.
assortativity_degree()
uses vertex degree (minus one) as vertex values
and calls assortativity()
.
A single real number.
Gabor Csardi csardi.gabor@gmail.com
M. E. J. Newman: Mixing patterns in networks, Phys. Rev. E 67, 026126 (2003) https://arxiv.org/abs/condmat/0209450
M. E. J. Newman: Assortative mixing in networks, Phys. Rev. Lett. 89, 208701 (2002) https://arxiv.org/abs/condmat/0205405
# random network, close to zero
assortativity_degree(sample_gnp(10000, 3 / 10000))
# BA model, tends to be dissortative
assortativity_degree(sample_pa(10000, m = 4))
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