R/data.R

In imcExperiment: Mass Cytometry S4 Class Structure Pipeline for Images

#' data
#'
#' Data set containing 1,000 cells and 73 features which include panel antibody, neighborhood computations, and phenograph clustering.
#' @docType data
#' @usage data(data)
#' @format A data frame of 1,000 cells and histoCAT features
#' \describe{
#'   \item{ImageId}{feature from histoCAT}
#'   \item{CellId}{feature from histoCAT}
#'   \item{marker1}{feature from histoCAT}
#'   \item{marker2}{feature from histoCAT}
#'   \item{marker3}{feature from histoCAT}
#'   \item{marker4}{feature from histoCAT}
#'   \item{marker5}{feature from histoCAT}
#'   \item{marker6}{feature from histoCAT}
#'   \item{marker7}{feature from histoCAT}
#'   \item{marker8}{feature from histoCAT}
#'   \item{marker9}{feature from histoCAT}
#'   \item{marker10}{feature from histoCAT}
#'   \item{marker11}{feature from histoCAT}
#'   \item{marker12}{feature from histoCAT}
#'   \item{marker13}{feature from histoCAT}
#'   \item{marker14}{feature from histoCAT}
#'   \item{marker15}{feature from histoCAT}
#'   \item{marker16}{feature from histoCAT}
#'   \item{marker17}{feature from histoCAT}
#'   \item{marker18}{feature from histoCAT}
#'   \item{marker19}{feature from histoCAT}
#'   \item{marker20}{feature from histoCAT}
#'   \item{marker21}{feature from histoCAT}
#'   \item{marker22}{feature from histoCAT}
#'   \item{marker23}{feature from histoCAT}
#'   \item{marker24}{feature from histoCAT}
#'   \item{marker25}{feature from histoCAT}
#'   \item{marker26}{feature from histoCAT}
#'   \item{marker27}{feature from histoCAT}
#'   \item{marker28}{feature from histoCAT}
#'   \item{marker29}{feature from histoCAT}
#'   \item{marker30}{feature from histoCAT}
#'   \item{marker31}{feature from histoCAT}
#'   \item{marker32}{feature from histoCAT}
#'   \item{marker33}{feature from histoCAT}
#'   \item{marker34}{feature from histoCAT}
#'  \item{Area}{feature from histoCAT}
#'  \item{Eccentricity}{feature from histoCAT}
#'  \item{Solidity}{feature from histoCAT}
#'  \item{Extent}{feature from histoCAT}
#'  \item{EulerNumber}{feature from histoCAT}
#'  \item{Perimeter}{feature from histoCAT}
#'  \item{MajorAxisLength}{feature from histoCAT}
#'  \item{MinorAxisLength}{feature from histoCAT}
#'  \item{Orientation}{feature from histoCAT}
#'  \item{X_position}{feature from histoCAT}
#'  \item{Y_position}{feature from histoCAT}
#'  \item{Percent_Touching}{feature from histoCAT}
#'  \item{Number_Neighbors}{feature from histoCAT}
#'  \item{neighbour_4_CellId1}{feature from histoCAT}
#'  \item{neighbour_4_CellId2}{feature from histoCAT}
#'  \item{neighbour_4_CellId3}{feature from histoCAT}
#'  \item{neighbour_4_CellId4}{feature from histoCAT}
#'  \item{neighbour_4_CellId5}{feature from histoCAT}
#'  \item{neighbour_4_CellId6}{feature from histoCAT}
#'  \item{neighbour_4_CellId7}{feature from histoCAT}
#'  \item{neighbour_4_CellId8}{feature from histoCAT}
#'  \item{neighbour_4_CellId9}{feature from histoCAT}
#'  \item{neighbour_4_CellId10}{feature from histoCAT}
#'  \item{Phenograph7851534969}{feature from histoCAT}
#'  \item{tSNE4148542692_1}{feature from histoCAT}
#'  \item{tSNE4148542692_2}{feature from histoCAT}
#'    }
"data"