enrich_f: enrich_f

In immcp: Poly-Pharmacology Toolkit for Traditional Chinese Medicine Research

enrich_f

Description

Enrich Analysis

Usage

enrich_f(
  target_character,
  geneset = c("kegg", "mkegg", "go", "wp"),
  arguments = list(minGSSize = 5, maxGSSize = 500, pvalue = 0.05, qvalue = 0.1),
  out_dataframe = TRUE,
  to_ENTREZID = TRUE
)

Arguments

target_character	Charactor vector of gene.
geneset	Charactor vector, one of "kegg"(KEGG), "mkegg"(KEGG Module), "go"(GO-BP), and "wp"(WikiPathways); a data frame and list.
arguments	A list of the arguments of clusterProfiler, including minGSSize, maxGSSize, pvalue, and qvalue.
out_dataframe	Logical, whether to output data frame,defaults to FALSE.
to_ENTREZID	Logical, whether to translate to ENTREZID from SYMBOL, defaults to TRUE.

Value

data frame

Author(s)

Yuanlong Hu

immcp documentation built on May 12, 2022, 9:05 a.m.