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## File Name: prior_hrm.R
## File Version: 0.212
##########################################################
# prior distributions for HRM
prior_hrm <- function( prior, b, a, phi,est_settings, sd_init=1 )
{
prior0 <- prior
est.a <- est_settings$est.a
est.sigma <- est_settings$est.sigma
est.mu <- est_settings$est.mu
est.phi <- est_settings$est.phi
est.psi <- est_settings$est.psi
prior <- list()
psi <- phi
# b and a parameters
prior$b$M <- 0*b
prior$b$SD <- 10 + 0*b
# prior$a$M <- 0*a
# prior$a$SD <- 10 + 0*a
prior$a$M <- 0*a
if ( ! est.a ){
prior$a$SD <- 1E-6 + 0*a
} else {
prior$a$SD <- 5 + 0*a
}
# phi and psi parameters
prior$phi$M <- 0 + 0*phi
prior$psi$M <- .4 + 0*psi
prior$phi$SD <- 10 + 0*phi
prior$psi$SD <- 10 + 0*psi
if ( est.psi=='n' ){
prior$psi$M <- 1E-10+ 0*psi
prior$psi$SD <- 1E-30 +0*psi
}
# distribution parameters
prior$mu$M <- 0
if ( ! est.mu ){
prior$mu$SD <- 1E-10
} else {
prior$mu$SD <- 1E5
}
if ( est.sigma ){
prior$sigma2$w0 <- .001
} else {
prior$sigma2$w0 <- 1E10
}
prior$sigma2$sig02 <- sd_init
#****************
# defaults from prior
if ( ! is.null( prior0 )){
L1 <- length(prior0)
for (vv in 1L:L1){
# vv <- 1
vv_label <- names(prior0)[vv]
prior0.vv <- prior0[[vv]]
L2 <- length( prior0[[vv]])
for (zz in 1L:L2){
zz_label <- names(prior0.vv)[[zz]]
prior[[ vv_label ]][[ zz_label ]] <- prior0.vv[[zz]]
}
}
}
return(prior)
}
##########################################################
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