knitr::opts_chunk$set(echo = TRUE) knitr::opts_chunk$set(fig.align = "center") knitr::opts_chunk$set(fig.width = 12) knitr::opts_chunk$set(fig.height = 6) library(immunarch)
In order to make the visualization process easier, we developed a Shiny-based tool called FixVis. It is distributed with the immunarch
package. To run FixVis just apply it to any ggplot2-based plot, including those from the immunarch
's vis
function. It works perfectly for every plot. FixVis can work only with one plot at a time.
Here is an example of how to run FixVis with vis
function from immunarch
. First, the plot is generated by vis
function from immunarch
and then FixVis is applied:
data(immdata) gu = geneUsage(immdata$data) p = vis(gu) fixVis(p)
If you want to test it, run fixVis
with no arguments; it will use the diamonds data for visualisation:
fixVis()
For your convenience we published a FixVis instances that are available online here. Also, a quick overview of FixVis is embedded below:
knitr::include_app("https://immunomind.shinyapps.io/fixvis/", height = "800px")
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