R/immunarch-remaster.R

In immunarch: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

# .check_immundata <- function (.object) {
#   if (!is.instance(.object, "ImmunData")) {
#     stop("Error: the input object is not of class ImmunData. Immunarch works on ImmunData only. Helpful manual: ...")
#   }
# }
#
# .repertoire_overlap <- function (.data, .method, .verbose = TRUE, ...) {
#   check_immundata(.data)
# }
#
# .gene_usage <- function (.data, .gene, .type, .use_counts, .norm, .gene_vec) {
#
# }
#
# .repertoire_diversity <- function (.data, .method, .verbose = TRUE, ...) {
#
# }
#
# .track_clonotypes <- function () {
#
# }
#
# .public_repertoire <- function () {
#
# }