API for immundata
A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| IMD_GLOBALS | Man page |
| ImmunData | Man page |
| `dimnames<-.ImmunData` | Source code |
| `names<-.ImmunData` | Source code |
| agg_receptors | Man page Source code |
| agg_repertoires | Man page Source code |
| agg_strata | Man page Source code |
| annotate | Man page |
| annotate_anndata | Man page Source code |
| annotate_barcodes | Man page Source code |
| annotate_chains | Man page Source code |
| annotate_immundata | Man page Source code |
| annotate_receptors | Man page Source code |
| annotate_seurat | Man page Source code |
| annotate_tbl_distance | Source code |
| annotate_tbl_regex | Source code |
| assert_receptor_schema | Man page Source code |
| build_lineage_event | Source code |
| build_metadata_lineage | Source code |
| build_write_metadata_json | Source code |
| check_file_extensions | Source code |
| check_seq_options | Source code |
| collect.ImmunData | Man page Source code |
| compute.ImmunData | Man page Source code |
| count.ImmunData | Man page Source code |
| dimnames.ImmunData | Man page Source code |
| dimnames<-.ImmunData | Man page |
| downsample_immundata | Man page Source code |
| filter.ImmunData | Man page Source code |
| filter_barcodes | Man page Source code |
| filter_by_levenshtein | Source code |
| filter_immundata | Man page Source code |
| filter_receptors | Man page Source code |
| from_immunarch | Man page Source code |
| get_test_idata | Man page Source code |
| get_test_idata_tsv_metadata | Source code |
| get_test_idata_tsv_no_metadata | Source code |
| get_test_idata_tsv_with_metadata | Source code |
| get_test_ig_data | Source code |
| get_test_ig_drop_cols | Source code |
| get_test_immundata | Man page Source code |
| imd_default_provenance | Source code |
| imd_drop_cols | Man page Source code |
| imd_files | Man page Source code |
| imd_format_snapshot_version | Source code |
| imd_generate_snapshot_id | Source code |
| imd_get_provenance | Source code |
| imd_list_snapshot_versions | Source code |
| imd_meta_schema | Man page Source code |
| imd_next_snapshot_version | Source code |
| imd_now_utc_iso | Source code |
| imd_parse_snapshot_version | Source code |
| imd_random_suffix | Source code |
| imd_receptor_chains | Man page Source code |
| imd_receptor_features | Man page Source code |
| imd_rename_cols | Man page Source code |
| imd_repertoire_schema | Man page Source code |
| imd_resolve_snapshot_output_folder | Source code |
| imd_schema | Man page Source code |
| imd_schema_sym | Man page Source code |
| imd_set_provenance | Source code |
| imd_validate_snapshot_tag | Source code |
| immundata | Man page |
| immundata-package | Man page |
| is_legacy_metadata_v1 | Source code |
| is_snapshot_version_path | Source code |
| list_available_snapshot_tags | Source code |
| make_barcode_prefix | Man page Source code |
| make_default_postprocessing | Man page Source code |
| make_default_preprocessing | Man page Source code |
| make_exclude_columns | Man page Source code |
| make_pattern_columns | Source code |
| make_productive_filter | Man page Source code |
| make_receptor_schema | Man page Source code |
| make_seq_options | Man page Source code |
| mutate.ImmunData | Man page Source code |
| mutate_immundata | Man page Source code |
| names<-.ImmunData | Man page |
| normalize_json_character_field | Source code |
| normalize_metadata_json | Source code |
| normalize_nullable_path | Source code |
| normalize_provenance | Source code |
| print.ImmunData | Source code |
| read_immundata | Man page Source code |
| read_metadata | Man page Source code |
| read_repertoires | Man page Source code |
| rename_strata | Man page Source code |
| resolve_snapshot_input_path | Source code |
| test_receptor_schema | Man page Source code |
| to_sym | Source code |
| upgrade_metadata_v1_to_v2 | Source code |
| validate_lineage_events | Source code |
| validate_metadata_extensions | Source code |
| validate_metadata_lineage_args | Source code |
| validate_metadata_lineage_columns | Source code |
| validate_metadata_lineage_inputs | Source code |
| validate_metadata_lineage_pipeline | Source code |
| write_immundata | Man page Source code |
| write_immundata_internal | Source code |
