API for immundata
A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics
| Global functions | |
|---|---|
| .onLoad | Source code |
| IMD_GLOBALS | Man page |
| ImmunData | Man page |
| `dimnames<-.ImmunData` | Source code |
| `names<-.ImmunData` | Source code |
| agg_receptors | Man page Source code |
| agg_repertoires | Man page Source code |
| agg_strata | Man page Source code |
| annotate | Man page |
| annotate_anndata | Man page Source code |
| annotate_barcodes | Man page Source code |
| annotate_chains | Man page Source code |
| annotate_immundata | Man page Source code |
| annotate_receptors | Man page Source code |
| annotate_seurat | Man page Source code |
| annotate_tbl_distance | Source code |
| annotate_tbl_regex | Source code |
| assert_mutable_annotation_columns | Source code |
| assert_receptor_schema | Man page Source code |
| assert_unique_manifest_paths | Source code |
| build_snapshot_metadata | Source code |
| check_file_extensions | Source code |
| check_seq_options | Source code |
| clone_with_annotations | Source code |
| collect.ImmunData | Man page Source code |
| compute.ImmunData | Man page Source code |
| count.ImmunData | Man page Source code |
| default_provenance | Source code |
| dimnames.ImmunData | Man page Source code |
| dimnames<-.ImmunData | Man page |
| downsample_immundata | Man page Source code |
| draw_weighted_counts | Source code |
| drop_repertoire_state | Source code |
| filter.ImmunData | Man page Source code |
| filter_barcodes | Man page Source code |
| filter_immundata | Man page Source code |
| filter_receptors | Man page Source code |
| format_missing_columns_issue | Source code |
| format_snapshot_version | Source code |
| from_immunarch | Man page Source code |
| generate_snapshot_id | Source code |
| get_provenance | Source code |
| get_test_idata | Man page Source code |
| imd_drop_cols | Man page Source code |
| imd_files | Man page Source code |
| imd_meta_schema | Man page Source code |
| imd_receptor_chains | Man page Source code |
| imd_receptor_features | Man page Source code |
| imd_rename_cols | Man page Source code |
| imd_repertoire_schema | Man page Source code |
| imd_schema | Man page Source code |
| imd_schema_sym | Man page Source code |
| immundata | Man page |
| immundata-package | Man page |
| is_legacy_metadata_v1 | Source code |
| is_special_repertoire_schema | Source code |
| is_unsupported_duckplyr_window_error | Source code |
| list_snapshot_tags | Source code |
| list_snapshot_versions | Source code |
| make_barcode_prefix | Man page Source code |
| make_default_postprocessing | Man page Source code |
| make_default_preprocessing | Man page Source code |
| make_exclude_columns | Man page Source code |
| make_pattern_columns | Source code |
| make_productive_filter | Man page Source code |
| make_receptor_schema | Man page Source code |
| make_seq_options | Man page Source code |
| mutate.ImmunData | Man page Source code |
| mutate_annotations_by | Source code |
| mutate_immundata | Man page Source code |
| names<-.ImmunData | Man page |
| normalize_json_character_field | Source code |
| normalize_metadata_json | Source code |
| normalize_metadata_v2 | Source code |
| normalize_nullable_path | Source code |
| normalize_provenance | Source code |
| print.ImmunData | Man page Source code |
| protected_annotation_columns | Source code |
| provenance_paths_for_metadata | Source code |
| read_immundata | Man page Source code |
| read_manifest | Man page Source code |
| read_repertoires | Man page Source code |
| rebuild_repertoire_and_strata | Source code |
| rename_strata | Man page Source code |
| resolve_artifacts_path | Source code |
| resolve_repertoire_schema | Source code |
| resolve_snapshot_input | Source code |
| resolve_snapshot_output_folder | Source code |
| resolve_snapshot_version | Source code |
| set_provenance | Source code |
| test_receptor_schema | Man page Source code |
| upgrade_metadata_v1_to_v2 | Source code |
| validate_snapshot_columns | Source code |
| validate_snapshot_tag | Source code |
| write_immundata | Man page Source code |
| write_immundata_internal | Source code |
