Man pages for immundata
A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics
| agg_receptors | Group AIRR sequence rows into receptors |
| agg_repertoires | Define biological repertoires and calculate receptor... |
| agg_strata | Group repertoires into biological strata |
| annotate_anndata | Annotate an AnnData object from ImmunData (by barcode) |
| annotate_immundata | Add external information to ImmunData |
| annotate_seurat | Annotate a Seurat object from ImmunData (by barcode) |
| collect.ImmunData | Collect ImmunData annotations |
| compute.ImmunData | Compute ImmunData annotations |
| count.ImmunData | Count chain rows in ImmunData |
| dimnames.ImmunData | Get Annotation Dimnames from ImmunData |
| dimnames-set-.ImmunData | Prevent Renaming ImmunData via dimnames |
| downsample_immundata | Reduce repertoires to a common sampling depth |
| filter_immundata | Keep selected rows or receptors in ImmunData |
| from_immunarch | Convert an immunarch Object into an ImmunData Dataset |
| get_test_idata | Get test datasets from 'immundata' |
| IMD_GLOBALS | Internal Immundata Global Configuration |
| imd_input_columns | Get input-column presets |
| imd_schema | Get a standard ImmunData column name |
| imd_schema_sym | Developer helpers for ImmunData schemas and storage |
| ImmunData | ImmunData: A data structure for storing adaptive immune... |
| immundata-package | immundata: A Unified Data Layer for Large-Scale Single-Cell,... |
| make_receptor_schema | Define which chain observations form the same receptor |
| make_seq_options | Create options for comparing receptor sequences |
| mutate_immundata | Add or change annotation columns in ImmunData |
| names-set-.ImmunData | Prevent Renaming ImmunData via names |
| preprocess_postprocess | Process chain rows while reading repertoire files |
| print.ImmunData | Display the contents and biological definitions of ImmunData |
| read_immundata | Load an ImmunData object from disk |
| read_manifest | Load and Validate a Manifest for Immune Repertoire Files |
| read_repertoires | Read immune repertoire files into ImmunData |
| rename_strata | Give biological strata readable labels |
| write_immundata | Save an ImmunData object to disk |
