Files in immundata

A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics

README.md R/core_immundata.R R/io_immundata_write.R R/io_metadata_read.R R/operations_utils.R R/operations_filter.R R/io_repertoires_read.R R/operations_agg_receptors.R R/operations_agg_repertoires.R R/io_immundata_conversion.R R/operations_external_annotate_anndatar.R R/operations_count.R R/operations_concat.R R/operations_mutate.R R/io_repertoires_processing.R R/operations_compute_collect.R R/io_immundata_write_internal.R R/io_repertoires_utils.R R/operations_dimnames.R R/immundata-package.R R/operations_print.R R/operations_external_annotate_seurat.R R/test_utils.R R/zzz.R R/operations_agg_strata.R R/operations_annotate.R R/globals.R R/operations_downsample.R R/io_immundata_write_utils.R R/operations_utils_levenshtein.R R/io_immundata_read_utils.R R/io_annotations_write.R R/io_immundata_read.R tests/testthat.R tests/testthat/test-io-repertoires-files.R tests/testthat/test-filter-receptors.R tests/testthat/test-annotate-receptors.R tests/testthat/test-compute-collect-immundata.R tests/testthat/test-filter-immundata-lev.R tests/testthat/test-io-repertoires-schema.R tests/testthat/test-io-immundata.R tests/testthat/test-io-repertoires-counts.R tests/testthat/test-io-repertoires-schema-bulk.R tests/testthat/test-annotate-barcodes.R tests/testthat/test-io-repertoires-schema-table.R tests/testthat/test-io-repertoires-schema-paired.R tests/testthat/test-filter-barcodes.R tests/testthat/test-filter-immundata-regex.R tests/testthat/test-annotate-external.R tests/testthat/helper-io.R tests/testthat/test-filter-immundata-hamm.R tests/testthat/test-filter-immundata.R tests/testthat/test-io-repertoires-schema-single.R tests/testthat/test-downsample.R tests/testthat/test-agg-strata.R tests/testthat/test-annotate-immundata.R tests/testthat/test-io-repertoires-processing.R tests/testthat/test-filter-immundata-exact.R tests/testthat/test-io-repertoires-agg.R man/make_receptor_schema.Rd man/count.ImmunData.Rd man/preprocess_postprocess.Rd man/from_immunarch.Rd man/dimnames.ImmunData.Rd man/IMD_GLOBALS.Rd man/ImmunData.Rd man/annotate_immundata.Rd man/make_seq_options.Rd man/agg_strata.Rd man/get_test_immundata.Rd man/agg_receptors.Rd man/mutate_immundata.Rd man/immundata-package.Rd man/imd_schema.Rd man/read_metadata.Rd man/collect.ImmunData.Rd man/names-set-.ImmunData.Rd man/agg_repertoires.Rd man/read_immundata.Rd man/read_repertoires.Rd man/get_test_idata.Rd man/filter_immundata.Rd man/write_immundata.Rd man/annotate_anndata.Rd man/rename_strata.Rd man/downsample_immundata.Rd man/dimnames-set-.ImmunData.Rd man/annotate_seurat.Rd man/compute.ImmunData.Rd