Man pages for immundata
A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics
| agg_receptors | Aggregates AIRR data into receptors |
| agg_repertoires | Aggregate AIRR data into repertoires |
| agg_strata | Aggregate repertoires into strata |
| annotate_anndata | Annotate an AnnData object from ImmunData (by barcode) |
| annotate_immundata | Annotate ImmunData object |
| annotate_seurat | Annotate a Seurat object from ImmunData (by barcode) |
| collect.ImmunData | Collect ImmunData annotations |
| compute.ImmunData | Compute ImmunData annotations |
| count.ImmunData | Count the number of chains in ImmunData |
| dimnames.ImmunData | Get Annotation Dimnames from ImmunData |
| dimnames-set-.ImmunData | Prevent Renaming ImmunData via dimnames |
| downsample_immundata | Downsample ImmunData annotations at the repertoire level |
| filter_immundata | Filter ImmunData by receptor features, barcodes or any... |
| from_immunarch | Convert an immunarch Object into an ImmunData Dataset |
| get_test_idata | Get test datasets from 'immundata' |
| get_test_immundata | Get test datasets from 'immundata' |
| IMD_GLOBALS | Internal Immundata Global Configuration |
| imd_schema | Get Immundata internal schema field names |
| ImmunData | ImmunData: A Unified Structure for Immune Receptor Repertoire... |
| immundata-package | immundata: A Unified Data Layer for Large-Scale Single-Cell,... |
| make_receptor_schema | Create or validate a receptor schema object |
| make_seq_options | Build a 'seq_options' list for sequence‑based receptor... |
| mutate_immundata | Modify or Add Columns to ImmunData Annotations |
| names-set-.ImmunData | Prevent Renaming ImmunData via names |
| preprocess_postprocess | Preprocessing and postprocessing of input immune repertoire... |
| read_immundata | Load a saved ImmunData from disk |
| read_metadata | Load and Validate Metadata Table for Immune Repertoire Files |
| read_repertoires | Read and process immune repertoire files to immundata |
| rename_strata | Rename strata labels |
| write_immundata | Save ImmunData to disk |
