immunogenetr-package: immunogenetr: A Comprehensive Toolkit for Clinical HLA...
In immunogenetr: A Comprehensive Toolkit for Clinical HLA Informatics
immunogenetr-package R Documentation
immunogenetr: A Comprehensive Toolkit for Clinical HLA Informatics
Description
A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' https://tidyverse.tidyverse.org/ principles and making use of genotype list string (GL string, Mack et al. (2023) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1111/tan.15126")}) for storing and computing HLA genotype data. Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string. This library is intended for research use. Any application making use of this package in a clinical setting will need to be independently validated according to local regulations.
Author(s)
Maintainer: Nicholas Brown nicholas.brown@pennmedicine.upenn.edu (ORCID)
Authors:
Busra Coskun bcoskun@sas.upenn.edu (ORCID)
See Also
Useful links:
-
- \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.humimm.2025.111619")}
Report bugs at https://github.com/k96nb01/immunogenetr_package/issues
immunogenetr documentation built on April 14, 2026, 5:08 p.m.
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| immunogenetr-package | R Documentation |
immunogenetr: A Comprehensive Toolkit for Clinical HLA Informatics
Description
A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' https://tidyverse.tidyverse.org/ principles and making use of genotype list string (GL string, Mack et al. (2023) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1111/tan.15126")}) for storing and computing HLA genotype data. Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string. This library is intended for research use. Any application making use of this package in a clinical setting will need to be independently validated according to local regulations.
Author(s)
Maintainer: Nicholas Brown nicholas.brown@pennmedicine.upenn.edu (ORCID)
Authors:
Busra Coskun bcoskun@sas.upenn.edu (ORCID)
See Also
Useful links:
- \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.humimm.2025.111619")}
Report bugs at https://github.com/k96nb01/immunogenetr_package/issues
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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