R/IndexingBulk.R

In inDAGO: A GUI for Dual and Bulk RNA-Sequencing Analysis

#' Bulk indexing
#'
#' @param basename output basename
#' @param reference reference genome
#' @param gappedIndex gapped structure
#' @param indexSplit split structure
#' @param memory handling memory
#' @param TH_subread threshold memory usage
IndexingBulk <- function (basename, reference, gappedIndex, indexSplit,
                          memory, TH_subread)
{
    Rsubread::buildindex(
        basename = basename,
        reference = reference,
        gappedIndex = gappedIndex,
        indexSplit = indexSplit,
        memory = memory,
        TH_subread = TH_subread)
}