introgress: methods for analyzing introgression between divergent lineages

introgress provides functions for analyzing introgression of genotypes between divergent, hybridizing lineages, including estimating genomic clines from multi-locus genotype data and testing for deviations from neutral expectations. Functions are also provided for maximum likelihood estimation of molecular hybrid index and graphical analysis.

AuthorZachariah Gompert, C. Alex Buerkle
Date of publication2012-10-29 08:59:02
MaintainerC. Alex Buerkle <buerkle@uwyo.edu>
LicenseGPL (>= 2)
Version1.2.3
http://www.uwyo.edu/buerkle/software/introgress/

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Files in this package

introgress
introgress/data
introgress/data/p1DataSim2.rda
introgress/data/LociDataSim2.rda
introgress/data/p1D.rda
introgress/data/AdmixDataSim1.rda
introgress/data/p2DataSim2.rda
introgress/data/LociDataSim1.rda
introgress/data/AdmixDataSim2.rda
introgress/data/LociD.rda
introgress/data/AdmixDom.rda
introgress/data/p2D.rda
introgress/NAMESPACE
introgress/man
introgress/man/delta.Rd introgress/man/AdmixDom.Rd introgress/man/LociD.Rd introgress/man/prepare.data.Rd introgress/man/fit.c.clines.Rd introgress/man/p2D.Rd introgress/man/p1D.Rd introgress/man/fit.invariant.clines.Rd introgress/man/fixup.combos.touse.Rd introgress/man/calc.intersp.het.Rd introgress/man/support.limit.Rd introgress/man/s.wrapper.Rd introgress/man/AdmixDataSim2.Rd introgress/man/LociDataSim1.Rd introgress/man/like.h.Rd introgress/man/p1DataSim2.Rd introgress/man/h.func.Rd introgress/man/test.data.objects.Rd introgress/man/genomic.clines.Rd introgress/man/introgress-package.Rd introgress/man/p2DataSim2.Rd introgress/man/est.h.Rd introgress/man/composite.clines.Rd introgress/man/LociDataSim2.Rd introgress/man/per.locus.like.Rd introgress/man/test.genotypes.Rd introgress/man/mk.image.Rd introgress/man/AdmixDataSim1.Rd introgress/man/compare.clines.Rd introgress/man/test.combinations.Rd introgress/man/clines.plot.Rd introgress/man/triangle.plot.Rd
introgress/DESCRIPTION
introgress/MD5
introgress/R
introgress/R/compare.clines.R introgress/R/composite.clines.R introgress/R/triangle.plot.R introgress/R/per.locus.like.R introgress/R/calc.intersp.het.R introgress/R/s.wrapper.R introgress/R/fixup.combos.touse.R introgress/R/fit.c.clines.R introgress/R/test.combinations.R introgress/R/test.data.objects.R introgress/R/genomic.clines.R introgress/R/fit.invariant.clines.R introgress/R/h.func.R introgress/R/like.h.R introgress/R/test.genotypes.R introgress/R/clines.plot.R introgress/R/support.limit.R introgress/R/est.h.R introgress/R/mk.image.R introgress/R/prepare.data.R introgress/R/delta.R

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