introgress: methods for analyzing introgression between divergent lineages

introgress provides functions for analyzing introgression of genotypes between divergent, hybridizing lineages, including estimating genomic clines from multi-locus genotype data and testing for deviations from neutral expectations. Functions are also provided for maximum likelihood estimation of molecular hybrid index and graphical analysis.

AuthorZachariah Gompert, C. Alex Buerkle
Date of publication2012-10-29 08:59:02
MaintainerC. Alex Buerkle <buerkle@uwyo.edu>
LicenseGPL (>= 2)
Version1.2.3
http://www.uwyo.edu/buerkle/software/introgress/

View on CRAN

Functions

AdmixDataSim1 Man page
AdmixDataSim2 Man page
AdmixDom Man page
calc.intersp.het Man page
clines.plot Man page
compare.clines Man page
composite.clines Man page
delta Man page
est.h Man page
fit.c.clines Man page
fit.invariant.clines Man page
fixup.combos.touse Man page
genomic.clines Man page
h.func Man page
introgress-package Man page
like.h Man page
LociD Man page
LociDataSim1 Man page
LociDataSim2 Man page
mk.image Man page
p1D Man page
p1DataSim2 Man page
p2D Man page
p2DataSim2 Man page
per.locus.like Man page
prepare.data Man page
support.limit Man page
s.wrapper Man page
test.combinations Man page
test.data.objects Man page
test.genotypes Man page
triangle.plot Man page

Files

introgress
introgress/data
introgress/data/p1DataSim2.rda
introgress/data/LociDataSim2.rda
introgress/data/p1D.rda
introgress/data/AdmixDataSim1.rda
introgress/data/p2DataSim2.rda
introgress/data/LociDataSim1.rda
introgress/data/AdmixDataSim2.rda
introgress/data/LociD.rda
introgress/data/AdmixDom.rda
introgress/data/p2D.rda
introgress/NAMESPACE
introgress/man
introgress/man/delta.Rd introgress/man/AdmixDom.Rd introgress/man/LociD.Rd introgress/man/prepare.data.Rd introgress/man/fit.c.clines.Rd introgress/man/p2D.Rd introgress/man/p1D.Rd introgress/man/fit.invariant.clines.Rd introgress/man/fixup.combos.touse.Rd introgress/man/calc.intersp.het.Rd introgress/man/support.limit.Rd introgress/man/s.wrapper.Rd introgress/man/AdmixDataSim2.Rd introgress/man/LociDataSim1.Rd introgress/man/like.h.Rd introgress/man/p1DataSim2.Rd introgress/man/h.func.Rd introgress/man/test.data.objects.Rd introgress/man/genomic.clines.Rd introgress/man/introgress-package.Rd introgress/man/p2DataSim2.Rd introgress/man/est.h.Rd introgress/man/composite.clines.Rd introgress/man/LociDataSim2.Rd introgress/man/per.locus.like.Rd introgress/man/test.genotypes.Rd introgress/man/mk.image.Rd introgress/man/AdmixDataSim1.Rd introgress/man/compare.clines.Rd introgress/man/test.combinations.Rd introgress/man/clines.plot.Rd introgress/man/triangle.plot.Rd
introgress/DESCRIPTION
introgress/MD5
introgress/R
introgress/R/compare.clines.R introgress/R/composite.clines.R introgress/R/triangle.plot.R introgress/R/per.locus.like.R introgress/R/calc.intersp.het.R introgress/R/s.wrapper.R introgress/R/fixup.combos.touse.R introgress/R/fit.c.clines.R introgress/R/test.combinations.R introgress/R/test.data.objects.R introgress/R/genomic.clines.R introgress/R/fit.invariant.clines.R introgress/R/h.func.R introgress/R/like.h.R introgress/R/test.genotypes.R introgress/R/clines.plot.R introgress/R/support.limit.R introgress/R/est.h.R introgress/R/mk.image.R introgress/R/prepare.data.R introgress/R/delta.R

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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