AdmixDataSim1: Admixed Population Genotype Data from Simulation 1
In introgress: methods for analyzing introgression between divergent lineages
Description
Usage
Format
Source
References
See Also
Description
This data set contains genotypes for a simulated admixed
population. The simulated admixed population consisted of 500 diploid
hermaphroditic individuals with ten pairs of chromosomes, each one
Morgan in length. The admixed population resulted from an intitial
hybridization event between two parental populations (combined in equal
proportions) and mating within the admixed population continued for five
additional generations. Fitness of hybrids was determined based on a
marker at the center of chromosome 1; individuals homozygous at this
location had a fitness of 1, while heterozygotes had of fitness of
0.1. Two hundred admixed individuals were sampled at the completion of
the simulation and scored for 110 co-dominant markers spaced evenly
across all 10 linkage groups (at 10 cM intervals).
The data are provided as a matrix with rows and columns corresponding to
markers and individuals, respectively. Alleles inherited from parental
population 1 are recorded as P1 and alleles inherited from
parental population 2 are recoreded as P2.
Usage
1
Format
A matrix with 110 rows and 200 columns.
Source
From simulations conducted by CAB and ZG.
References
Gompert Z. and Buerkle C. A. (2009) A powerful regression-based
method for admixture mapping of isolation across the genome of
hybrids. Molecular Ecology, 18, 1207-1224.
Gompert Z. and Buerkle C. A. (2009) introgress: a software
package for mapping components of isolation in hybrids. Molecular
Ecology Resources, in preparation.
See Also
introgress documentation built on May 2, 2019, 7:24 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Source References See Also
Description
This data set contains genotypes for a simulated admixed population. The simulated admixed population consisted of 500 diploid hermaphroditic individuals with ten pairs of chromosomes, each one Morgan in length. The admixed population resulted from an intitial hybridization event between two parental populations (combined in equal proportions) and mating within the admixed population continued for five additional generations. Fitness of hybrids was determined based on a marker at the center of chromosome 1; individuals homozygous at this location had a fitness of 1, while heterozygotes had of fitness of 0.1. Two hundred admixed individuals were sampled at the completion of the simulation and scored for 110 co-dominant markers spaced evenly across all 10 linkage groups (at 10 cM intervals).
The data are provided as a matrix with rows and columns corresponding to markers and individuals, respectively. Alleles inherited from parental population 1 are recorded as P1 and alleles inherited from parental population 2 are recoreded as P2.
Usage
1 |
Format
A matrix with 110 rows and 200 columns.
Source
From simulations conducted by CAB and ZG.
References
Gompert Z. and Buerkle C. A. (2009) A powerful regression-based method for admixture mapping of isolation across the genome of hybrids. Molecular Ecology, 18, 1207-1224.
Gompert Z. and Buerkle C. A. (2009) introgress: a software package for mapping components of isolation in hybrids. Molecular Ecology Resources, in preparation.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.