ionflows: Calculate the Number of Required Flows for Semiconductor Sequencing

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Two methods for calculation of the number of required flows for semiconductor sequencing: 1. Using a simulation, the number of flows can be calculated for a concrete list of amplicons. 2. An exact combinatorial model is evaluated to calculate the number of flows for a random ensemble of sequences.

Author
Michael Bockmayr and Jan Budczies
Date of publication
2014-11-10 09:55:34
Maintainer
Michael Bockmayr <michael.bockmayr@charite.de>
License
GPL-3
Version
1.1

View on CRAN

Man pages

chp2
An example BED file.
flowsPanel
Simulation algorithm to calculate the number of required...
flowsRandom
A function to compute the percentage of covered random...
ionflows-package
Calculate the Number of Required Flows for Semiconductor...
readBed
This is a function to read BED files.

Files in this package

ionflows
ionflows/NAMESPACE
ionflows/data
ionflows/data/chp2.rda
ionflows/R
ionflows/R/calcFlows.R
ionflows/R/flowsRandom.R
ionflows/R/extractSeqs.R
ionflows/R/ionflows-internal.R
ionflows/R/extractFlows.R
ionflows/R/flowsPanel.R
ionflows/R/readBed.R
ionflows/MD5
ionflows/DESCRIPTION
ionflows/man
ionflows/man/flowsRandom.Rd
ionflows/man/ionflows-package.Rd
ionflows/man/readBed.Rd
ionflows/man/chp2.Rd
ionflows/man/flowsPanel.Rd