Two methods for calculation of the number of required flows for semiconductor sequencing: 1. Using a simulation, the number of flows can be calculated for a concrete list of amplicons. 2. An exact combinatorial model is evaluated to calculate the number of flows for a random ensemble of sequences.
Author  Michael Bockmayr and Jan Budczies 
Date of publication  20141110 09:55:34 
Maintainer  Michael Bockmayr <michael.bockmayr@charite.de> 
License  GPL3 
Version  1.1 
Package repository  View on CRAN 
Installation  Install the latest version of this package by entering the following in R:



All man pages Function index File listing
Man pages  

chp2: An example BED file.  
flowsPanel: Simulation algorithm to calculate the number of required...  
flowsRandom: A function to compute the percentage of covered random...  
ionflowspackage: Calculate the Number of Required Flows for Semiconductor...  
readBed: This is a function to read BED files. 
Functions  

calcFlows  Source code 
chp2  Man page 
extractFlows  Source code 
extractSeqs  Source code 
flowsPanel  Man page Source code 
flowsRandom  Man page Source code 
ionflows  Man page 
ionflowspackage  Man page 
readBed  Man page Source code 
Files  

NAMESPACE
 
data
 
data/chp2.rda
 
R
 
R/calcFlows.R  
R/flowsRandom.R  
R/extractSeqs.R  
R/ionflowsinternal.R  
R/extractFlows.R  
R/flowsPanel.R  
R/readBed.R  
MD5
 
DESCRIPTION
 
man
 
man/flowsRandom.Rd  
man/ionflowspackage.Rd  
man/readBed.Rd  
man/chp2.Rd  
man/flowsPanel.Rd 
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