Calculate the Number of Required Flows for Semiconductor Sequencing

Description

This package implements two methods for calculation of the number of required flows for semiconductor sequencing: 1. Using a simulation, the number of flows can be calculated for a concrete list of amplicons. 2. An exact combinatorial model is evaluated to calculate the number of flows for a random ensemble of sequences.

Details

Package: ionflows
Type: Package
Version: 1.0
Date: 2014-10-21
License: GPL-3

Author(s)

Michael Bockmayr <michael.bockmayr@charite.de>,

Jan Budczies <jan.budczies@charite.de>,

Institute of Pathology, Charité University Hospital,

Charitéplatz 1, 10117 Berlin, Germany

References

Budczies, J et al. Semiconductor sequencing: How many flows do you need? Submitted.