flowsRandom: A function to compute the percentage of covered random...
In ionflows: Calculate the Number of Required Flows for Semiconductor Sequencing
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Evaluation of an exact expression to obtain the percentage of all random nucleotide sequences of a given length (n) that can be sequenced with semiconductor sequencing given a certain number of flows (k).
Usage
1
flowsRandom(k = 300, n = 150)
Arguments
k
Integer. Number of flows available during semiconductor sequencing.
n
Integer. Length of the random sequences to be sequenced.
Value
P
Percentage of sequences that are completely covered
Q
Percentage of sequences that are not completely covered
delta
1 - (P + Q), should be a small number when calculation is accurate
N
Number of summands for calculation of P
M
Number of summands for calculation of Q
summands
N + M = total number of summands
Author(s)
Michael Bockmayr and Jan Budczies
Examples
1
2
3
### To compute the percentage of covered sequences of length 150 with 300 flows run:
flowsRandom(300,150)
ionflows documentation built on May 2, 2019, 3:08 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Evaluation of an exact expression to obtain the percentage of all random nucleotide sequences of a given length (n) that can be sequenced with semiconductor sequencing given a certain number of flows (k).
Usage
1 | flowsRandom(k = 300, n = 150)
|
Arguments
k |
Integer. Number of flows available during semiconductor sequencing. |
n |
Integer. Length of the random sequences to be sequenced. |
Value
P |
Percentage of sequences that are completely covered |
Q |
Percentage of sequences that are not completely covered |
delta |
1 - (P + Q), should be a small number when calculation is accurate |
N |
Number of summands for calculation of P |
M |
Number of summands for calculation of Q |
summands |
N + M = total number of summands |
Author(s)
Michael Bockmayr and Jan Budczies
Examples
1 2 3 | ### To compute the percentage of covered sequences of length 150 with 300 flows run:
flowsRandom(300,150)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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