UD1_Qmat: A list of Q matrices of simulation of 20 populations
In ipADMIXTURE: Iterative Pruning Population Admixture Inference Framework
Description
A dataset containing admixture ratios of 1200 individuals from 20 simulation populations where the number of ancestors ranges from 2 to 18.
This dataset was the result of running LEA library developed by Frichot, E., & François, O. (2015). LEA: An R package for landscape and ecological association studies. Methods in Ecology and Evolution, 6(8), 925-929.
on the 20-simulation-population dataset published by Limpiti, T., et al. (2014). iNJclust: iterative neighbor-joining tree clustering framework for inferring population structure. IEEE/ACM transactions on computational biology and bioinformatics, 11(5), 903-914.
Usage
1
Format
A list of Q matrices of 1200 individuals from 20 populations. There are Q matrices that have the number of ancestors ranges from from 2 to 18.
- UD1_Qmat
It is list of Q matrices that contains admixture ratios of 1200 individuals from the 20-population dataset.
UD1_Qmat[[k]][i,j] is the admixture ratio of jth ancestor for ith individual in the (k+1)-ancestor Q matrix.
...
ipADMIXTURE documentation built on March 26, 2020, 7:38 p.m.
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Description
A dataset containing admixture ratios of 1200 individuals from 20 simulation populations where the number of ancestors ranges from 2 to 18. This dataset was the result of running LEA library developed by Frichot, E., & François, O. (2015). LEA: An R package for landscape and ecological association studies. Methods in Ecology and Evolution, 6(8), 925-929. on the 20-simulation-population dataset published by Limpiti, T., et al. (2014). iNJclust: iterative neighbor-joining tree clustering framework for inferring population structure. IEEE/ACM transactions on computational biology and bioinformatics, 11(5), 903-914.
Usage
1 |
Format
A list of Q matrices of 1200 individuals from 20 populations. There are Q matrices that have the number of ancestors ranges from from 2 to 18.
- UD1_Qmat
It is list of Q matrices that contains admixture ratios of 1200 individuals from the 20-population dataset.
UD1_Qmat[[k]][i,j]is the admixture ratio of jth ancestor for ith individual in the (k+1)-ancestor Q matrix.
...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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