plotClusterLeaves: plotClusterLeaves
In ipADMIXTURE: Iterative Pruning Population Admixture Inference Framework
View source: R/plotClusterLeaves.R
plotClusterLeaves R Documentation
plotClusterLeaves
Description
plotClusterLeaves is function that plots clusters in a form of treemap plot.
Subsquares represent clusters. Each subsquare contains cluster label (ID),
number of members (N), and a maximum of manitude-difference of admixture ratios (md).
A size of each subsquare represents a ratio of member numbers compared to other clusters.
A color represents an md value of cluster.
Usage
plotClusterLeaves(obj)
Arguments
obj
is an object of ipADMIXTURE class.
Examples
h27pop_obj<-ipADMIXTURE(Qmat=ipADMIXTURE::human27pop_Qmat[[11]], admixRatioThs =0.15)
ipADMIXTURE::plotClusterLeaves(h27pop_obj)
ipADMIXTURE documentation built on June 8, 2025, 10:16 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/plotClusterLeaves.R
| plotClusterLeaves | R Documentation |
plotClusterLeaves
Description
plotClusterLeaves is function that plots clusters in a form of treemap plot. Subsquares represent clusters. Each subsquare contains cluster label (ID), number of members (N), and a maximum of manitude-difference of admixture ratios (md). A size of each subsquare represents a ratio of member numbers compared to other clusters. A color represents an md value of cluster.
Usage
plotClusterLeaves(obj)
Arguments
obj |
is an object of ipADMIXTURE class. |
Examples
h27pop_obj<-ipADMIXTURE(Qmat=ipADMIXTURE::human27pop_Qmat[[11]], admixRatioThs =0.15)
ipADMIXTURE::plotClusterLeaves(h27pop_obj)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.