plotClusterLeaves: plotClusterLeaves
In ipADMIXTURE: Iterative Pruning Population Admixture Inference Framework
Description
Usage
Arguments
Examples
View source: R/plotClusterLeaves.R
Description
plotClusterLeaves is function that plots clusters in a form of treemap plot.
Subsquares represent clusters. Each subsquare contains cluster label (ID),
number of members (N), and a maximum of manitude-difference of admixture ratios (md).
A size of each subsquare represents a ratio of member numbers compared to other clusters.
A color represents an md value of cluster.
Usage
1
plotClusterLeaves(obj)
Arguments
obj
is an object of ipADMIXTURE class.
Examples
1
2
h27pop_obj<-ipADMIXTURE(Qmat=ipADMIXTURE::human27pop_Qmat[[11]], admixRatioThs =0.15)
ipADMIXTURE::plotClusterLeaves(h27pop_obj)
ipADMIXTURE documentation built on March 26, 2020, 7:38 p.m.
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Description Usage Arguments Examples
View source: R/plotClusterLeaves.R
Description
plotClusterLeaves is function that plots clusters in a form of treemap plot. Subsquares represent clusters. Each subsquare contains cluster label (ID), number of members (N), and a maximum of manitude-difference of admixture ratios (md). A size of each subsquare represents a ratio of member numbers compared to other clusters. A color represents an md value of cluster.
Usage
1 | plotClusterLeaves(obj)
|
Arguments
obj |
is an object of ipADMIXTURE class. |
Examples
1 2 | h27pop_obj<-ipADMIXTURE(Qmat=ipADMIXTURE::human27pop_Qmat[[11]], admixRatioThs =0.15)
ipADMIXTURE::plotClusterLeaves(h27pop_obj)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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