get_ptm_enzymes_from_file: Get PTM Enzymes using a file

In iptmnetr: Interface to the 'iPTMnet' API

Description

This function is similar to get_ptm_enzymes_from_list except that it loads the kinases from TSV file.

Usage

get_ptm_enzymes_from_file(file_name)

Arguments

file_name

A string representing file name of the file containing the list of kinases. The file should be a Tab seperated file with three columns "substrate_ac", "site_residue" and "position" without headers. Example : Q13619 S 10 Q8TDM6 S 1021 Q6ZRV2 S 1025 Q15121 S 104 O15164 S 1042 Q8NDI1 S 1058 P00533 S 1064 Q16555 S 107 Q8NFC6 S 1077

Value

A Dataframe representing the enzymes

Examples

## Not run: enzymes = get_ptm_enzymes_from_file("kinases.txt")

iptmnetr documentation built on Dec. 5, 2019, 5:09 p.m.