Description Usage Arguments Value Examples
Searches the iPTMNet database with the given search parameters
1 2 | search_iptmnet(search_term, term_type, role, ptm_vector = c(),
organism_vector = c())
|
search_term |
A string representing the search Term |
term_type |
A string specifying type of search term. Supported values are "All", "UniprotID", "Protein/Gene Name","PMID". Use the TermType function for getting a list of possible values. |
role |
A string representing the roles to filter by.
Supported Values are "Enzyme or Substrate", "Enzyme", "Substrate","Enzyme and Substrate".
Use the Role function for getting a list of possible values.
Example - |
ptm_vector |
A vector representing the PTM types to filter by. Use the PTMTypes function for getting a list of possible values. Pass empty vector if you don't want filter by PTMTypes. Example - c(PTMType()$Acetylation,PTMType()$Phosphorylation) |
organism_vector |
A vector of integers representing the taxon codes for organisms to filter by. |
A dataframe with search results.
1 2 3 4 5 | result <- search_iptmnet(search_term = "smad2",
term_type=TermType()$ALL,
Role()$EnzymeOrSubstrate,
ptm_vector=c(),
organism_vector=c())
|
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