Description Usage Arguments Value Examples
This function is similar to get_ptm_ppi_from_list except that it loads the kinases from TSV file
1 | get_ptm_ppi_from_file(file_name)
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file_name |
A string representing file name of the file containing the list of kinases. The file should be a Tab seperated file with three columns "substrate_ac", "site_residue" and "position" without headers. Example : Q13619 S 10 Q8TDM6 S 1021 Q6ZRV2 S 1025 Q15121 S 104 O15164 S 1042 Q8NDI1 S 1058 P00533 S 1064 Q16555 S 107 Q8NFC6 S 1077 |
A dataframe containing the PTM dependent PPI interaction information.
1 | ## Not run: ptm_dep_ppi = get_ptm_ppi_from_file(kinases.txt)
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