iq: Protein Quantification in Mass Spectrometry-Based Proteomics

An implementation of the maximal peptide ratio extraction module of the MaxLFQ algorithm by Cox et al. (2014) <doi:10.1074/mcp.M113.031591> in a complete pipeline for processing proteomics data in data-independent acquisition mode (Pham et al. 2020 <doi:10.1093/bioinformatics/btz961>). It offers additional options for protein quantification using the N most intense fragment ions, using all fragment ions, and a wrapper for the median polish algorithm by Tukey (1977, ISBN:0201076160).

Package details

AuthorThang Pham [aut, cre, cph, ctb] (<https://orcid.org/0000-0003-0333-2492>), Alex Henneman [ctb] (<https://orcid.org/0000-0002-3746-4410>)
MaintainerThang Pham <t.pham@amsterdamumc.nl>
LicenseBSD_3_clause + file LICENSE
Version1.9.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("iq")

Try the iq package in your browser

Any scripts or data that you put into this service are public.

iq documentation built on Sept. 15, 2021, 9:08 a.m.