median_polish: A wrapper for the R implementation of the median polish...
In iq: Protein Quantification in Mass Spectrometry-Based Proteomics
median_polish R Documentation
A wrapper for the R implementation of the median polish algorithm
Description
Estimates protein abundances using the Tukey median polish algorithm.
Usage
median_polish(X)
Arguments
X
A matrix of ion intensities in log2 space. Columns are samples and rows are fragment ions.
Value
A list of two components is returned
estimate
A vector with length equal to the number of columns of the input containing the protein abundances in log2 space.
annotation
Reserved, currently an empty string
Author(s)
Thang V. Pham
References
Pham TV, Henneman AA, Jimenez CR. iq: an R package to estimate relative protein
abundances from ion quantification in DIA-MS-based proteomics. Bioinformatics 2020 Apr 15;36(8):2611-2613.
Tukey JW. Exploratory Data Analysis, Reading Massachusetts: Addison-Wesley,
1977.
iq documentation built on March 31, 2023, 11:34 p.m.
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| median_polish | R Documentation |
A wrapper for the R implementation of the median polish algorithm
Description
Estimates protein abundances using the Tukey median polish algorithm.
Usage
median_polish(X)
Arguments
X |
A matrix of ion intensities in log2 space. Columns are samples and rows are fragment ions. |
Value
A list of two components is returned
estimate |
A vector with length equal to the number of columns of the input containing the protein abundances in log2 space. |
annotation |
Reserved, currently an empty string |
Author(s)
Thang V. Pham
References
Pham TV, Henneman AA, Jimenez CR. iq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics. Bioinformatics 2020 Apr 15;36(8):2611-2613.
Tukey JW. Exploratory Data Analysis, Reading Massachusetts: Addison-Wesley, 1977.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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