meanInt: The meanInt algorithm for protein quantification
In iq: Protein Quantification in Mass Spectrometry-Based Proteomics
meanInt R Documentation
The meanInt algorithm for protein quantification
Description
Estimates protein abundances by averaging all associated ion intensities
Usage
meanInt(X, aggregation_in_log_space = TRUE)
Arguments
X
A matrix of ion intensities in log2 space. Columns are samples and rows are fragment ions.
aggregation_in_log_space
A logical value. If FALSE, the data aggregation is performed in the original intensity space.
Value
A list of two components is returned
estimate
A vector with length equal to the number of columns of the input containing the protein abundances in log2 space.
annotation
Reserved, currently an empty string.
Author(s)
Thang V. Pham
References
Pham TV, Henneman AA, Jimenez CR. iq: an R package to estimate relative protein
abundances from ion quantification in DIA-MS-based proteomics. Bioinformatics 2020 Apr 15;36(8):2611-2613.
iq documentation built on March 31, 2023, 11:34 p.m.
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| meanInt | R Documentation |
The meanInt algorithm for protein quantification
Description
Estimates protein abundances by averaging all associated ion intensities
Usage
meanInt(X, aggregation_in_log_space = TRUE)
Arguments
X |
A matrix of ion intensities in log2 space. Columns are samples and rows are fragment ions. |
aggregation_in_log_space |
A logical value. If |
Value
A list of two components is returned
estimate |
A vector with length equal to the number of columns of the input containing the protein abundances in log2 space. |
annotation |
Reserved, currently an empty string. |
Author(s)
Thang V. Pham
References
Pham TV, Henneman AA, Jimenez CR. iq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics. Bioinformatics 2020 Apr 15;36(8):2611-2613.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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