readISATab | R Documentation |
Reads an ISA-Tab dataset, given as a zip file or as a set of files in a specific folder, and builds an object of the ISA class.
readISATab(path = getwd(), zipfile = NULL, verbose = FALSE)
path |
A character vector with the name of the directory in which the
ISA-Tab files are located (if the parameter zipfile is not provided or if it
is equal to |
zipfile |
A character vector with the name of the zip archive containing
ISA-Tab files themselves (without a directory name in the zip archive). The
default value is |
verbose |
Should the messages for the different reading steps be shown? |
An object of the ISA class.
## Read example Atwell data set. isaObject1 <- readISATab(path = file.path(system.file("extdata/Atwell", package = "isatabr"))) ## Read example zipped Atwell data set. isazip <- "Atwell.zip" isaObject2 <- readISATab(path = file.path(system.file("extdata", package = "isatabr")), zipfile = isazip, verbose = TRUE)
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