Man pages for itsdm
Isolation Forest-Based Presence-Only Species Distribution Modeling
| cmcc_bioclim | Download historic Bioclimatic indicators (BIOs) named... |
| convert_to_pa | Convert predicted suitability to presence-absence map. |
| detect_envi_change | Detect areas influenced by a changing environment variable. |
| dim_reduce | Remove environmental variables that have high correlation... |
| evaluate_po | Evaluate the model based on presence-only data. |
| format_observation | Format the occurrence dataset for usage in 'itsdm' |
| future_cmcc_bioclim | Download future Bioclimatic indicators (BIOs) named... |
| future_worldclim2 | A function to parse the future climate from worldclim version... |
| independent_response | Calculate independent responses of each variables. |
| isotree_po | Build Isolation forest species distribution model and explain... |
| itsdm-package | Isolation forest-based presence-only species distribution... |
| mainland_africa | Boundary of mainland Africa |
| marginal_response | Calculate marginal responses of each variables. |
| occ_virtual_species | Occurrence dataset of a virtual species |
| plot.EnviChange | Display the figure and map of the 'EnviChange' object. |
| plot.EnvironmentalOutlier | Exhibit suspicious outliers in an observation dataset. |
| plot.IndependentResponse | Show independent response curves. |
| plot.MarginalResponse | Show marginal response curves. |
| plot.PAConversion | Display results of conversion to presence-absence (PA). |
| plot.POEvaluation | Show model evaluation. |
| plot.ShapDependence | Show variable dependence plots and variable interaction plots... |
| plot.SHAPSpatial | Display Shapley values-based spatial variable dependence... |
| plot.SpatialResponse | Display spatial variable dependence maps. |
| plot.VariableAnalysis | Display variable importance. |
| plot.VariableContribution | Exhibit variable contribution for target observations. |
| print.EnviChange | Print summary information from 'EnviChange' object. |
| print.EnvironmentalOutlier | Print summary information from 'EnvironmentalOutlier' object. |
| print.FormatOccurrence | Print summary information from 'FormatOccurrence' object. |
| print.PAConversion | Print summary information from 'PAConversion' object. |
| print.POEvaluation | Print summary information from model evaluation object... |
| print.POIsotree | Print summary information from 'POIsotree' object. |
| print.ReducedImageStack | Print summary information from 'ReducedImageStack' object. |
| print.VariableAnalysis | Print summary information from variable importance object... |
| probability | Estimate suitability on 'stars' object using trained... |
| shap_dependence | Calculate Shapley value-based variable dependence. |
| shap_spatial_response | Calculate shapley values-based spatial response. |
| spatial_response | Calculate spatial response or dependence figures. |
| suspicious_env_outliers | Function to detect suspicious outliers based on environmental... |
| variable_analysis | Function to evaluate relative importance of each variable. |
| variable_contrib | Evaluate variable contributions for targeted observations. |
| worldclim2 | Download environmental variables made by worldclim version... |
