API for jSDM
Joint Species Distribution Models

Global functions
.onAttach Source code
.onUnload Source code
Rcpp_jSDM_binomial_logit Source code
Rcpp_jSDM_binomial_logit_fixed_site Source code
Rcpp_jSDM_binomial_logit_fixed_site_lv Source code
Rcpp_jSDM_binomial_logit_lv Source code
Rcpp_jSDM_binomial_logit_rand_site Source code
Rcpp_jSDM_binomial_logit_rand_site_lv Source code
Rcpp_jSDM_binomial_logit_traits Source code
Rcpp_jSDM_binomial_logit_traits_fixed_site Source code
Rcpp_jSDM_binomial_logit_traits_fixed_site_lv Source code
Rcpp_jSDM_binomial_logit_traits_lv Source code
Rcpp_jSDM_binomial_logit_traits_rand_site Source code
Rcpp_jSDM_binomial_logit_traits_rand_site_lv Source code
Rcpp_jSDM_binomial_probit Source code
Rcpp_jSDM_binomial_probit_fixed_site Source code
Rcpp_jSDM_binomial_probit_fixed_site_long_format Source code
Rcpp_jSDM_binomial_probit_fixed_site_lv Source code
Rcpp_jSDM_binomial_probit_fixed_site_lv_long_format Source code
Rcpp_jSDM_binomial_probit_long_format Source code
Rcpp_jSDM_binomial_probit_lv Source code
Rcpp_jSDM_binomial_probit_lv_long_format Source code
Rcpp_jSDM_binomial_probit_rand_site Source code
Rcpp_jSDM_binomial_probit_rand_site_long_format Source code
Rcpp_jSDM_binomial_probit_rand_site_lv Source code
Rcpp_jSDM_binomial_probit_rand_site_lv_long_format Source code
Rcpp_jSDM_binomial_probit_traits Source code
Rcpp_jSDM_binomial_probit_traits_fixed_site Source code
Rcpp_jSDM_binomial_probit_traits_fixed_site_long_format Source code
Rcpp_jSDM_binomial_probit_traits_fixed_site_lv Source code
Rcpp_jSDM_binomial_probit_traits_fixed_site_lv_long_format Source code
Rcpp_jSDM_binomial_probit_traits_long_format Source code
Rcpp_jSDM_binomial_probit_traits_lv Source code
Rcpp_jSDM_binomial_probit_traits_lv_long_format Source code
Rcpp_jSDM_binomial_probit_traits_rand_site Source code
Rcpp_jSDM_binomial_probit_traits_rand_site_long_format Source code
Rcpp_jSDM_binomial_probit_traits_rand_site_lv Source code
Rcpp_jSDM_binomial_probit_traits_rand_site_lv_long_format Source code
Rcpp_jSDM_gaussian Source code
Rcpp_jSDM_gaussian_fixed_site Source code
Rcpp_jSDM_gaussian_fixed_site_lv Source code
Rcpp_jSDM_gaussian_lv Source code
Rcpp_jSDM_gaussian_rand_site Source code
Rcpp_jSDM_gaussian_rand_site_lv Source code
Rcpp_jSDM_gaussian_traits Source code
Rcpp_jSDM_gaussian_traits_fixed_site Source code
Rcpp_jSDM_gaussian_traits_fixed_site_lv Source code
Rcpp_jSDM_gaussian_traits_lv Source code
Rcpp_jSDM_gaussian_traits_rand_site Source code
Rcpp_jSDM_gaussian_traits_rand_site_lv Source code
Rcpp_jSDM_poisson_log Source code
Rcpp_jSDM_poisson_log_fixed_site Source code
Rcpp_jSDM_poisson_log_fixed_site_lv Source code
Rcpp_jSDM_poisson_log_lv Source code
Rcpp_jSDM_poisson_log_rand_site Source code
Rcpp_jSDM_poisson_log_rand_site_lv Source code
Rcpp_jSDM_poisson_log_traits Source code
Rcpp_jSDM_poisson_log_traits_fixed_site Source code
Rcpp_jSDM_poisson_log_traits_fixed_site_lv Source code
Rcpp_jSDM_poisson_log_traits_lv Source code
Rcpp_jSDM_poisson_log_traits_rand_site Source code
Rcpp_jSDM_poisson_log_traits_rand_site_lv Source code
add_curve Source code
add_legend Source code
add_species_arrows Source code
aravo Man page
birds Man page
calling.function Source code
check.V Source code
check.Valpha Source code
check.Vb.mat Source code
check.Vbeta Source code
check.Vbeta.mat Source code
check.Vgamma.mat Source code
check.Vlambda Source code
check.Vlambda.mat Source code
check.Y.gaussian Source code
check.mcmc.parameters Source code
check.mub Source code
check.mubeta Source code
check.mugamma.mat Source code
check.mulambda Source code
curve_text Source code
deg2rad Source code
eucalypts Man page
ff Source code
form.gamma.start.mat Source code
frogs Man page
fungi Man page
get_enviro_cor Man page Source code
get_residual_cor Man page Source code
inv_logit Man page Source code
is.scalar Source code
jSDM-package Man page
jSDM_binomial_logit Man page Source code
jSDM_binomial_probit Man page Source code
jSDM_binomial_probit_long_format Man page Source code
jSDM_binomial_probit_sp_constrained Man page Source code
jSDM_gaussian Man page Source code
jSDM_poisson_log Man page Source code
logit Man page Source code
madagascar Man page
mites Man page
mosquitos Man page
plot_associations Man page Source code
plot_residual_cor Man page Source code
predict.jSDM Man page Source code
rad2deg Source code
jSDM documentation built on July 26, 2023, 5:21 p.m.