Files in jSDM

Joint Species Distribution Models

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

cleanup

R/RcppExports.R R/hidden.R R/jSDM_binomial_probit_long_format.R R/jSDM_binomial_probit.R R/get_residual_cor.R R/jSDM_binomial_logit.R R/predict.jSDM.R R/get_enviro_cor.R R/plot_associations.R R/jSDM_poisson_log.R R/jSDM-package.R R/jSDM_gaussian.R R/logit.R R/jSDM_binomial_probit_sp_constrained.R R/zzz.R R/plot_residual_cor.R

src/Rcpp_jSDM_binomial_logit_traits_lv.cpp

src/Makevars.win

src/Makevars

src/Rcpp_jSDM_poisson_log_lv.cpp

src/Rcpp_jSDM_poisson_log_traits_fixed_site.cpp

src/Rcpp_jSDM_binomial_logit_traits_rand_site.cpp

src/Rcpp_jSDM_gaussian_traits_rand_site_lv.cpp

src/Rcpp_jSDM_binomial_probit_traits_rand_site_lv_long_format.cpp

src/Rcpp_jSDM_binomial_probit_rand_site_lv_long_format.cpp

src/Rcpp_jSDM_binomial_logit_traits_fixed_site_lv.cpp

src/Rcpp_jSDM_binomial_probit_traits_fixed_site_lv.cpp

src/Rcpp_jSDM_binomial_probit_rand_site_long_format.cpp

src/RcppExports.cpp

src/Rcpp_jSDM_poisson_log_traits_lv.cpp

src/Rcpp_jSDM_poisson_log_traits_rand_site_lv.cpp

src/Rcpp_jSDM_binomial_probit_traits_rand_site_long_format.cpp

src/Rcpp_jSDM_binomial_probit_fixed_site_lv.cpp

src/Rcpp_jSDM_binomial_probit.cpp

src/Rcpp_jSDM_poisson_log_fixed_site_lv.cpp

src/Rcpp_jSDM_binomial_logit_fixed_site.cpp

src/Rcpp_jSDM_binomial_probit_fixed_site.cpp

src/Rcpp_jSDM_poisson_log_traits.cpp

src/Rcpp_jSDM_binomial_logit_traits.cpp

src/Rcpp_jSDM_binomial_probit_traits_long_format.cpp

src/Rcpp_jSDM_binomial_probit_traits_fixed_site_long_format.cpp

src/Rcpp_jSDM_binomial_logit_fixed_site_lv.cpp

src/Rcpp_jSDM_gaussian_traits_fixed_site.cpp

src/Rcpp_jSDM_binomial_probit_fixed_site_lv_long_format.cpp

src/Rcpp_jSDM_poisson_log_traits_fixed_site_lv.cpp

src/Rcpp_jSDM_binomial_probit_lv.cpp

src/Rcpp_jSDM_gaussian_traits_lv.cpp

src/Rcpp_jSDM_gaussian_rand_site_lv.cpp

src/Rcpp_jSDM_gaussian_traits_rand_site.cpp

src/Rcpp_jSDM_gaussian_fixed_site_lv.cpp

src/Rcpp_jSDM_poisson_log.cpp

src/Rcpp_jSDM_binomial_probit_lv_long_format.cpp

src/Rcpp_jSDM_binomial_probit_traits_lv_long_format.cpp

src/Rcpp_jSDM_binomial_probit_rand_site.cpp

src/Rcpp_jSDM_gaussian_rand_site.cpp

src/Rcpp_jSDM_binomial_logit_lv.cpp

src/Rcpp_jSDM_binomial_logit_rand_site.cpp

src/Rcpp_jSDM_binomial_probit_traits.cpp

src/Rcpp_jSDM_poisson_log_rand_site_lv.cpp

src/Rcpp_jSDM_binomial_probit_traits_fixed_site_lv_long_format.cpp

src/Rcpp_jSDM_useful.h

src/Rcpp_jSDM_gaussian_traits.cpp

src/Rcpp_jSDM_binomial_probit_rand_site_lv.cpp

src/Rcpp_jSDM_binomial_probit_traits_rand_site.cpp

src/Rcpp_jSDM_binomial_probit_fixed_site_long_format.cpp

src/Rcpp_jSDM_binomial_logit_rand_site_lv.cpp

src/Rcpp_jSDM_binomial_probit_traits_fixed_site.cpp

src/Rcpp_jSDM_poisson_log_traits_rand_site.cpp

src/Rcpp_jSDM_binomial_logit_traits_fixed_site.cpp

src/Rcpp_jSDM_gaussian.cpp

src/Rcpp_jSDM_binomial_logit_traits_rand_site_lv.cpp

src/Rcpp_jSDM_useful.cpp

src/Rcpp_jSDM_binomial_logit.cpp

src/Rcpp_jSDM_poisson_log_rand_site.cpp

src/Rcpp_jSDM_gaussian_fixed_site.cpp

src/Rcpp_jSDM_gaussian_lv.cpp

src/Rcpp_jSDM_binomial_probit_long_format.cpp

src/Rcpp_jSDM_poisson_log_fixed_site.cpp

src/Rcpp_jSDM_gaussian_traits_fixed_site_lv.cpp

src/Rcpp_jSDM_binomial_probit_traits_rand_site_lv.cpp

src/Rcpp_jSDM_binomial_probit_traits_lv.cpp

inst/doc/jSDM.html

inst/doc/proof.R inst/doc/jSDM.R inst/doc/jSDM.Rmd

inst/doc/proof.html

inst/doc/proof.Rmd

build/vignette.rds

build/partial.rdb

tests/testthat.R tests/testthat/test-get_residual_cor.R tests/testthat/test-inv_logit.R tests/testthat/test-hidden.R tests/testthat/test-jSDM_binomial_logit.R tests/testthat/test-jSDM_gaussian.R tests/testthat/test-jSDM_poisson_log.R tests/testthat/test-predict.jSDM.R tests/testthat/test-jSDM_binomial_probit.R tests/testthat/test-jSDM_binomial_probit_sp_constrained.R tests/testthat/test-jSDM_binomial_probit_long_format.R tests/testthat/test-logit.R tests/testthat/test-get_enviro_cor.R vignettes/jSDM.Rmd vignettes/proof.Rmd

vignettes/figures/oribatid-mites.png

vignettes/figures/Fungi_.jpg

vignettes/figures/Frogs_.jpg

vignettes/figures/DAG-jSDM-rand.png

vignettes/figures/Litoria_ewingii.jpg

vignettes/figures/Mosquitos_.jpg

vignettes/figures/Eucalyptus_.jpg

vignettes/figures/birds_.jpg

vignettes/figures/swiss_breeding_birds_atlas.jpg

vignettes/figures/alpine_plants.png

vignettes/figures/alpine_plants_.png

vignettes/figures/Oribatid_mites.jpg

vignettes/figures/birds.jpg

vignettes/figures/des.jpg

vignettes/bib/journal-of-applied-ecology.csl

vignettes/bib/biblio-jSDM.bib

vignettes/bib/jae.bst

data/aravo.rda

data/madagascar.rda

data/fungi.rda

data/birds.rda

data/mites.rda

data/mosquitos.rda

data/frogs.rda

data/eucalypts.rda

man/inv_logit.Rd man/get_enviro_cor.Rd man/predict.jSDM.Rd man/jSDM_poisson_log.Rd man/jSDM_binomial_logit.Rd man/jSDM_binomial_probit.Rd man/mosquitos.Rd man/madagascar.Rd man/logit.Rd man/jSDM-package.Rd man/eucalypts.Rd man/jSDM_binomial_probit_long_format.Rd man/get_residual_cor.Rd man/plot_associations.Rd man/jSDM_binomial_probit_sp_constrained.Rd man/fungi.Rd man/jSDM_gaussian.Rd man/aravo.Rd man/birds.Rd man/mites.Rd man/frogs.Rd man/plot_residual_cor.Rd

man/figures/logo.png

man/figures/logo-cirad.svg

jSDM documentation built on July 26, 2023, 5:21 p.m.