Nothing
jSDM_gaussian
for fitting joint species distribution models from continuous Gaussian data, including an overdispersion parameter.terra
instead of raster
and sp
, which are depreciated, in the vignette Estimation of Madagascar's plant biodiversity. get_residual_cor
and plot_residual_cor
functions. jSDM_binomial_probit_sp_constrained
which aims to improve the convergence of latent variable models fitting by selecting the species constrained to have positive values of factor loadings $\lambda$ and new vignette Bernoulli probit regression with selected constrained species to illustrate its use. jSDM_binomial_probit
, jSDM_binomial_logit
and jSDM_poisson_log
functions to take into account interactions between species-specific traits and the environment in estimating species effects.jSDM_binomial_probit_block
and jSDM_binomial_probit_block_long_format
renamed jSDM_binomial_probit
and jSDM_binomial_probit_long_format
.plot_associations
to plot species-species associations.roxygen2
for documentation and NAMESPACE jSDM_binomial_probit_block
the function jSDM_probit_block
.jSDM_binomial_probit_block_long_format
for fitting joint species distribution models from presence-absence data in long format able to handle missing observations, multiple visits at sites and to integer species traits as explanatory variables. jSDM_poisson_log
for fitting joint species distribution models from abundance data inspired by Hui and Francis K. C. 2016 Methods in Ecology and Evolution (doi:10.1111/2041-210X.12514).jSDM_binomial_logit
for fitting joint species distribution models from presence-absence data at multiple-visited sites using a bayesian inference method inspired by Albert, James H. and Chib Siddhartha 1993 Journal of the American Statistical Association (doi:10.1080/01621459.1993.10476321).get_enviro_cor
to extract covariances and correlations due to shared environmental responses. jSDM-package
documentation mosquitos
, fungi
, eucalypts
, birds
, mites
, aravo
). pkgdown
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