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jointseg: Joint Segmentation of Multivariate (Copy Number) Signals
Methods for fast segmentation of multivariate signals into piecewise constant profiles and for generating realistic copy-number profiles. A typical application is the joint segmentation of total DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism (SNP) microarrays in cancer studies. The methods are described in Pierre-Jean, Rigaill and Neuvial (2015) <doi:10.1093/bib/bbu026>.
Getting started
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Package details |
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| Author | Morgane Pierre-Jean [aut, cre], Pierre Neuvial [aut], Guillem Rigaill [aut] |
| Maintainer | Morgane Pierre-Jean <mpierrejean.pro@gmail.com> |
| License | LGPL (>= 2.1) |
| Version | 1.0.2 |
| URL | https://github.com/mpierrejean/jointseg |
| Package repository | View on CRAN |
| Installation |
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