Files in jointseg

Joint Segmentation of Multivariate (Copy Number) Signals

MD5

NEWS.md

DESCRIPTION

README.md

NAMESPACE

inst/CITATION

inst/syntheticProfiles/customRegionProba.R inst/syntheticProfiles/sawtooth.R inst/syntheticProfiles/firestorm.R inst/doc/dataGeneration.R inst/doc/dataGeneration.Rmd inst/doc/PSSeg.Rmd

inst/doc/PSSeg.html

inst/doc/PSSeg.R

inst/doc/dataGeneration.html

inst/figures/SNR.R

inst/figures/cnProfiles.tex

inst/figures/evalTPFP.R inst/figures/copyNumberData.R inst/time/00.setup.R inst/time/R/02d.CBS.R inst/time/R/02g.CnaStruct.R inst/time/R/02b.PSCN.R inst/time/R/02e.PSCBS.R inst/time/R/02f.GFLars.R inst/time/R/02a.RBS+DP.R inst/time/R/Script.R inst/time/R/01.createDataSets.R inst/time/R/02i.DPSeg2d.R inst/time/R/00.setup.R inst/time/R/02c.cghseg.R inst/otherMethods/PSCN/doPSCN.R inst/otherMethods/ASCAT/predictGG.R inst/otherMethods/ASCAT/doASCAT.R inst/otherMethods/ASCAT/runASCAT.R inst/otherMethods/ASCAT/downloadASCAT.R

inst/otherMethods/PELT/jointSeg.bib

inst/otherMethods/PELT/doPelt.R

inst/otherMethods/PELT/doPelt.Rnw

inst/otherMethods/CnaStruct/doCnaStruct.R inst/eval/GSE11976/06.pAUCtable.R inst/eval/GSE11976/02d.CBS.R inst/eval/GSE11976/myImagePlot.R inst/eval/GSE11976/05.pAUCcurves.R inst/eval/GSE11976/02e.PSCBS.R inst/eval/GSE11976/02f.GFLars.R inst/eval/GSE11976/SnrForCaughtAndMissedBkp.R inst/eval/GSE11976/03.perf.R inst/eval/GSE11976/04.pAUC.R inst/eval/GSE11976/02a.RBS+DP.R inst/eval/GSE11976/01.createDataSets.R inst/eval/GSE11976/00.setup.R inst/eval/GSE11976/02c.cghseg.R inst/eval/GSE29172/06.pAUCtable.R inst/eval/GSE29172/02d.CBS.R inst/eval/GSE29172/myImagePlot.R inst/eval/GSE29172/05.pAUCcurves.R inst/eval/GSE29172/02e.PSCBS.R inst/eval/GSE29172/02f.GFLars.R inst/eval/GSE29172/SnrForCaughtAndMissedBkp.R inst/eval/GSE29172/03.perf.R inst/eval/GSE29172/04.pAUC.R inst/eval/GSE29172/02a.RBS+DP.R inst/eval/GSE29172/01.createDataSets.R inst/eval/GSE29172/00.setup.R inst/eval/GSE29172/02c.cghseg.R

vignettes/jointseg.bib

vignettes/dataGeneration.Rmd vignettes/PSSeg.Rmd R/modelSelection.R R/doPSCBS.R R/anotherBkp.R R/doGFLars.R R/binMissingValues.R R/segmentByRBS.R R/mapPositionsBack.R R/getTpFp.R R/randomProfile.R R/getUnivStat.R R/pruneByDP.R R/defaultWeights.R R/chooseK.R R/estimateSd.R R/doDynamicProgramming.R R/pruned_DP_C_access.R R/getCopyNumberDataByResampling.R R/oneBkp.R R/leftMultiplyByInvXAtXA.R R/doPSCN.R R/PSSeg.R R/prof.R R/jointSeg.R R/ERMadjustment.R R/leftMultiplyByXt.R R/getUnivJ.R R/plotSeg.R R/doRBS.R R/multiplyXtXBySparse.R R/doCBS.R R/segmentByGFLars.R

src/liste.h

src/Rwrappers.cc

src/Heap.h

src/init.c

src/Heap.cpp

src/colibri.cc

src/polynome2.h

src/Node.h

src/liste.cc

src/colibri.h

src/Node.cpp

man/getTpFp.Rd man/leftMultiplyByXt.Rd man/getUnivJ.Rd man/estimateSd.Rd man/mapPositionsBack.Rd man/doCBS.Rd man/getCopyNumberDataByResampling.Rd man/randomProfile.Rd man/defaultWeights.Rd man/modelSelection.Rd man/multiplyXtXBySparse.Rd man/PSSeg.Rd man/doPSCN.Rd man/doDynamicProgramming.Rd man/segmentByGFLars.Rd man/jointSeg.Rd man/prof.Rd man/oneBkp.Rd man/plotSeg.Rd man/leftMultiplyByInvXAtXA.Rd man/Fpsn.Rd man/anotherBkp.Rd man/doRBS.Rd man/doGFLars.Rd man/binMissingValues.Rd man/pruneByDP.Rd man/getUnivStat.Rd man/doPSCBS.Rd man/segmentByRBS.Rd man/retour_sn.Rd

build/vignette.rds

tests/testthat.R tests/testthat/test_getCopyNumberDataByResampling.R tests/testthat/test_jointSeg.R tests/testthat/test_prunedDPA.R

jointseg documentation built on May 2, 2019, 6:10 a.m.