wkmeans: Weighted k-means for mixed-type data

In kamila: Methods for Clustering Mixed-Type Data

Description

Weighted k-means for mixed continuous and categorical variables. A user-specified weight conWeight controls the relative contribution of the variable types to the cluster solution.

Usage

wkmeans(conData, catData, conWeight, nclust, ...)

Arguments

conData	The continuous variables. Must be coercible to a data frame.
catData	The categorical variables, either as factors or dummy-coded variables. Must be coercible to a data frame.
conWeight	The continuous weight; must be between 0 and 1. The categorical weight is 1-conWeight.
nclust	The number of clusters.
...	Optional arguments passed to kmeans.

Details

A simple adaptation of stats::kmeans to mixed-type data. Continuous variables are multiplied by the input parameter conWeight, and categorical variables are multipled by 1-conWeight. If factor variables are input to catData, they are transformed to 0-1 dummy coded variables with the function dummyCodeFactorDf.

Value

A stats::kmeans results object, with additional slots conCenters and catCenters giving the actual centers adjusted for the weighting process.

See Also

dummyCodeFactorDf

kmeans

Examples

# Generate toy data set with poor quality categorical variables and good
# quality continuous variables.
set.seed(1)
dat <- genMixedData(200, nConVar=2, nCatVar=2, nCatLevels=4, nConWithErr=2,
  nCatWithErr=2, popProportions=c(.5,.5), conErrLev=0.3, catErrLev=0.8)
catDf <- data.frame(apply(dat$catVars, 2, factor), stringsAsFactors = TRUE)
conDf <- data.frame(scale(dat$conVars), stringsAsFactors = TRUE)

# A clustering that emphasizes the continuous variables
r1 <- with(dat,wkmeans(conDf, catDf, 0.9, 2))
table(r1$cluster, dat$trueID)

# A clustering that emphasizes the categorical variables; note argument
# passed to the underlying stats::kmeans function
r2 <- with(dat,wkmeans(conDf, catDf, 0.1, 2, nstart=4))
table(r2$cluster, dat$trueID)

Example output

   
     1  2
  1 92  7
  2 10 91
   
     1  2
  1 80 64
  2 22 34

kamila documentation built on March 13, 2020, 9:08 a.m.